miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25528 5' -54.2 NC_005337.1 + 93058 0.67 0.922816
Target:  5'- uUCGC-CGAgg-UCCGCGGGcuaaGCGCc -3'
miRNA:   3'- cAGCGcGCUauaAGGUGCCCa---UGCGc -5'
25528 5' -54.2 NC_005337.1 + 2365 0.67 0.922816
Target:  5'- -cCGCGCcaGGUGcUCUAuCGGGUGCGuCGa -3'
miRNA:   3'- caGCGCG--CUAUaAGGU-GCCCAUGC-GC- -5'
25528 5' -54.2 NC_005337.1 + 123128 0.67 0.922816
Target:  5'- cGUCGUGCGGcgc-CCGuCGcGGUGCGUGu -3'
miRNA:   3'- -CAGCGCGCUauaaGGU-GC-CCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 95231 0.67 0.922816
Target:  5'- gGUCGCGCGAcuggUCCGUGcacucGUGCGCGc -3'
miRNA:   3'- -CAGCGCGCUaua-AGGUGCc----CAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 97776 0.67 0.917127
Target:  5'- cGUCGCGcCGAgcg-CCGCGGc--CGCGg -3'
miRNA:   3'- -CAGCGC-GCUauaaGGUGCCcauGCGC- -5'
25528 5' -54.2 NC_005337.1 + 29752 0.67 0.917127
Target:  5'- cUCGaccuCGgGGUcgUCCAaccgggcgucCGGGUGCGCGa -3'
miRNA:   3'- cAGC----GCgCUAuaAGGU----------GCCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 34827 0.67 0.917127
Target:  5'- -aCGCGCGcg--UCCACGaGGUGgcccacgcCGCGg -3'
miRNA:   3'- caGCGCGCuauaAGGUGC-CCAU--------GCGC- -5'
25528 5' -54.2 NC_005337.1 + 41440 0.67 0.91596
Target:  5'- cGUCGCGuUGAgcagcuccaCCGCGGGaGCGCu -3'
miRNA:   3'- -CAGCGC-GCUauaa-----GGUGCCCaUGCGc -5'
25528 5' -54.2 NC_005337.1 + 54577 0.67 0.911194
Target:  5'- cUCGCGCGAgcUgaacgaccucUCCACGGGcaccuCGCc -3'
miRNA:   3'- cAGCGCGCUauA----------AGGUGCCCau---GCGc -5'
25528 5' -54.2 NC_005337.1 + 36285 0.67 0.911194
Target:  5'- -cUGCGCGAacgcggCCACGGuGU-CGCGg -3'
miRNA:   3'- caGCGCGCUauaa--GGUGCC-CAuGCGC- -5'
25528 5' -54.2 NC_005337.1 + 12047 0.67 0.90502
Target:  5'- -gCGUGCGGUcgUCC--GGcGUGCGCGc -3'
miRNA:   3'- caGCGCGCUAuaAGGugCC-CAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 130659 0.68 0.898605
Target:  5'- -gCGCGCGAgggacgUCUACGGcGcUACGCc -3'
miRNA:   3'- caGCGCGCUaua---AGGUGCC-C-AUGCGc -5'
25528 5' -54.2 NC_005337.1 + 60044 0.68 0.898605
Target:  5'- gGUCG-GCGAUGUgcucccacaggUUCAgGuGGUGCGCGa -3'
miRNA:   3'- -CAGCgCGCUAUA-----------AGGUgC-CCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 56454 0.68 0.895972
Target:  5'- --gGCGCGGUGgccgagaccaaggUCUACGGGcGCGUGc -3'
miRNA:   3'- cagCGCGCUAUa------------AGGUGCCCaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 97662 0.68 0.892628
Target:  5'- gGUCGCGCGcgcgcuccaggCCGCGGGcgugcACGUGg -3'
miRNA:   3'- -CAGCGCGCuauaa------GGUGCCCa----UGCGC- -5'
25528 5' -54.2 NC_005337.1 + 10100 0.68 0.891953
Target:  5'- -gCGgGCGAgg-UCCACGaaGGUcACGCGg -3'
miRNA:   3'- caGCgCGCUauaAGGUGC--CCA-UGCGC- -5'
25528 5' -54.2 NC_005337.1 + 99626 0.68 0.891953
Target:  5'- cGUCGUGCGcGUGcgggaCACGGacGUGCGCGg -3'
miRNA:   3'- -CAGCGCGC-UAUaag--GUGCC--CAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 73551 0.68 0.877953
Target:  5'- -cCGCGCGGUcgUCgACGGGcacuucuuCGUGa -3'
miRNA:   3'- caGCGCGCUAuaAGgUGCCCau------GCGC- -5'
25528 5' -54.2 NC_005337.1 + 28249 0.68 0.877953
Target:  5'- cGUCGCGCGGca--CCACGcgcacGUGCGUGg -3'
miRNA:   3'- -CAGCGCGCUauaaGGUGCc----CAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 74945 0.68 0.869868
Target:  5'- -cCGCGCGG-AUgcggugcuggggcUCCGCGGcUACGCGa -3'
miRNA:   3'- caGCGCGCUaUA-------------AGGUGCCcAUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.