miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25532 5' -60.1 NC_005337.1 + 12443 0.66 0.720457
Target:  5'- -uCACGAgcaCGUCGGCCGGCGUcauaCCGa- -3'
miRNA:   3'- acGUGCU---GUAGUCGGCCGCGc---GGCac -5'
25532 5' -60.1 NC_005337.1 + 568 0.66 0.720457
Target:  5'- cGCGCGuacGCcgCGGCCGcGCGgaagcCGCCGg- -3'
miRNA:   3'- aCGUGC---UGuaGUCGGC-CGC-----GCGGCac -5'
25532 5' -60.1 NC_005337.1 + 122212 0.66 0.720457
Target:  5'- gGCGCgGACGU--GUCGGCGCGCaCGc- -3'
miRNA:   3'- aCGUG-CUGUAguCGGCCGCGCG-GCac -5'
25532 5' -60.1 NC_005337.1 + 568 0.66 0.720457
Target:  5'- cGCGCGuacGCcgCGGCCGcGCGgaagcCGCCGg- -3'
miRNA:   3'- aCGUGC---UGuaGUCGGC-CGC-----GCGGCac -5'
25532 5' -60.1 NC_005337.1 + 58705 0.66 0.720457
Target:  5'- cGCGucauCGcCGUCGGCagguagaugGGCGCGCCGg- -3'
miRNA:   3'- aCGU----GCuGUAGUCGg--------CCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 52115 0.66 0.720457
Target:  5'- gUGCGCGACG--GGCCGGCcaugGCcuUCGUGg -3'
miRNA:   3'- -ACGUGCUGUagUCGGCCG----CGc-GGCAC- -5'
25532 5' -60.1 NC_005337.1 + 63122 0.66 0.720457
Target:  5'- aGCgACGACAUCuGCCaacaGGUGCaguuGCCGg- -3'
miRNA:   3'- aCG-UGCUGUAGuCGG----CCGCG----CGGCac -5'
25532 5' -60.1 NC_005337.1 + 38835 0.66 0.720457
Target:  5'- cGCugGACGcgUAcGCCGGCcuguGCGCCa-- -3'
miRNA:   3'- aCGugCUGUa-GU-CGGCCG----CGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 65796 0.66 0.720457
Target:  5'- aGCGCGGCGccCGGUgCGGCGgCGUCGa- -3'
miRNA:   3'- aCGUGCUGUa-GUCG-GCCGC-GCGGCac -5'
25532 5' -60.1 NC_005337.1 + 36551 0.66 0.720457
Target:  5'- gGCugGGCGgc-GCCGGCGaGCCa-- -3'
miRNA:   3'- aCGugCUGUaguCGGCCGCgCGGcac -5'
25532 5' -60.1 NC_005337.1 + 67744 0.66 0.714591
Target:  5'- gGCGCGGCGcgcagcuccagcgucUCGGCCGGCuGCaGCgGc- -3'
miRNA:   3'- aCGUGCUGU---------------AGUCGGCCG-CG-CGgCac -5'
25532 5' -60.1 NC_005337.1 + 56073 0.66 0.710667
Target:  5'- cGCACGACcUCAuGaCCGaggaGCGCGaCGUGg -3'
miRNA:   3'- aCGUGCUGuAGU-C-GGC----CGCGCgGCAC- -5'
25532 5' -60.1 NC_005337.1 + 123613 0.66 0.710667
Target:  5'- cGC-CGc---CGGCCGGCGCGCgGUc -3'
miRNA:   3'- aCGuGCuguaGUCGGCCGCGCGgCAc -5'
25532 5' -60.1 NC_005337.1 + 94576 0.66 0.710667
Target:  5'- gGCGCGGC--CAGCC-GCGUGUCGa- -3'
miRNA:   3'- aCGUGCUGuaGUCGGcCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 52313 0.66 0.710667
Target:  5'- cGCucaACGGCAUCAuguaCCGGCucaugucCGCCGUGu -3'
miRNA:   3'- aCG---UGCUGUAGUc---GGCCGc------GCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 94344 0.66 0.710667
Target:  5'- aGCACGugAcgcUCAGC--GCGCGCCa-- -3'
miRNA:   3'- aCGUGCugU---AGUCGgcCGCGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 98057 0.66 0.710667
Target:  5'- aGCGCG-CcgCGGCCGGCGCa----- -3'
miRNA:   3'- aCGUGCuGuaGUCGGCCGCGcggcac -5'
25532 5' -60.1 NC_005337.1 + 95334 0.66 0.710667
Target:  5'- gUGCGCGucGCAguagcGCCGGaGCGCCGa- -3'
miRNA:   3'- -ACGUGC--UGUagu--CGGCCgCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 43829 0.66 0.710667
Target:  5'- -cCACGcuGCAgcgGGCCGGCGgCGCgGUGg -3'
miRNA:   3'- acGUGC--UGUag-UCGGCCGC-GCGgCAC- -5'
25532 5' -60.1 NC_005337.1 + 28997 0.66 0.710667
Target:  5'- aGCgGCGGCcgcccaggGUCAGCCacGGCGgccccaaGCCGUGg -3'
miRNA:   3'- aCG-UGCUG--------UAGUCGG--CCGCg------CGGCAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.