Results 1 - 20 of 266 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25532 | 5' | -60.1 | NC_005337.1 | + | 12443 | 0.66 | 0.720457 |
Target: 5'- -uCACGAgcaCGUCGGCCGGCGUcauaCCGa- -3' miRNA: 3'- acGUGCU---GUAGUCGGCCGCGc---GGCac -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 568 | 0.66 | 0.720457 |
Target: 5'- cGCGCGuacGCcgCGGCCGcGCGgaagcCGCCGg- -3' miRNA: 3'- aCGUGC---UGuaGUCGGC-CGC-----GCGGCac -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 122212 | 0.66 | 0.720457 |
Target: 5'- gGCGCgGACGU--GUCGGCGCGCaCGc- -3' miRNA: 3'- aCGUG-CUGUAguCGGCCGCGCG-GCac -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 568 | 0.66 | 0.720457 |
Target: 5'- cGCGCGuacGCcgCGGCCGcGCGgaagcCGCCGg- -3' miRNA: 3'- aCGUGC---UGuaGUCGGC-CGC-----GCGGCac -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 58705 | 0.66 | 0.720457 |
Target: 5'- cGCGucauCGcCGUCGGCagguagaugGGCGCGCCGg- -3' miRNA: 3'- aCGU----GCuGUAGUCGg--------CCGCGCGGCac -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 52115 | 0.66 | 0.720457 |
Target: 5'- gUGCGCGACG--GGCCGGCcaugGCcuUCGUGg -3' miRNA: 3'- -ACGUGCUGUagUCGGCCG----CGc-GGCAC- -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 63122 | 0.66 | 0.720457 |
Target: 5'- aGCgACGACAUCuGCCaacaGGUGCaguuGCCGg- -3' miRNA: 3'- aCG-UGCUGUAGuCGG----CCGCG----CGGCac -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 38835 | 0.66 | 0.720457 |
Target: 5'- cGCugGACGcgUAcGCCGGCcuguGCGCCa-- -3' miRNA: 3'- aCGugCUGUa-GU-CGGCCG----CGCGGcac -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 65796 | 0.66 | 0.720457 |
Target: 5'- aGCGCGGCGccCGGUgCGGCGgCGUCGa- -3' miRNA: 3'- aCGUGCUGUa-GUCG-GCCGC-GCGGCac -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 36551 | 0.66 | 0.720457 |
Target: 5'- gGCugGGCGgc-GCCGGCGaGCCa-- -3' miRNA: 3'- aCGugCUGUaguCGGCCGCgCGGcac -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 67744 | 0.66 | 0.714591 |
Target: 5'- gGCGCGGCGcgcagcuccagcgucUCGGCCGGCuGCaGCgGc- -3' miRNA: 3'- aCGUGCUGU---------------AGUCGGCCG-CG-CGgCac -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 56073 | 0.66 | 0.710667 |
Target: 5'- cGCACGACcUCAuGaCCGaggaGCGCGaCGUGg -3' miRNA: 3'- aCGUGCUGuAGU-C-GGC----CGCGCgGCAC- -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 123613 | 0.66 | 0.710667 |
Target: 5'- cGC-CGc---CGGCCGGCGCGCgGUc -3' miRNA: 3'- aCGuGCuguaGUCGGCCGCGCGgCAc -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 94576 | 0.66 | 0.710667 |
Target: 5'- gGCGCGGC--CAGCC-GCGUGUCGa- -3' miRNA: 3'- aCGUGCUGuaGUCGGcCGCGCGGCac -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 52313 | 0.66 | 0.710667 |
Target: 5'- cGCucaACGGCAUCAuguaCCGGCucaugucCGCCGUGu -3' miRNA: 3'- aCG---UGCUGUAGUc---GGCCGc------GCGGCAC- -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 94344 | 0.66 | 0.710667 |
Target: 5'- aGCACGugAcgcUCAGC--GCGCGCCa-- -3' miRNA: 3'- aCGUGCugU---AGUCGgcCGCGCGGcac -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 98057 | 0.66 | 0.710667 |
Target: 5'- aGCGCG-CcgCGGCCGGCGCa----- -3' miRNA: 3'- aCGUGCuGuaGUCGGCCGCGcggcac -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 95334 | 0.66 | 0.710667 |
Target: 5'- gUGCGCGucGCAguagcGCCGGaGCGCCGa- -3' miRNA: 3'- -ACGUGC--UGUagu--CGGCCgCGCGGCac -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 43829 | 0.66 | 0.710667 |
Target: 5'- -cCACGcuGCAgcgGGCCGGCGgCGCgGUGg -3' miRNA: 3'- acGUGC--UGUag-UCGGCCGC-GCGgCAC- -5' |
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25532 | 5' | -60.1 | NC_005337.1 | + | 28997 | 0.66 | 0.710667 |
Target: 5'- aGCgGCGGCcgcccaggGUCAGCCacGGCGgccccaaGCCGUGg -3' miRNA: 3'- aCG-UGCUG--------UAGUCGG--CCGCg------CGGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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