miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25535 5' -55.9 NC_005337.1 + 117447 0.66 0.904946
Target:  5'- cUUCCUGGUG-Ca--CGGGGACAcGCu -3'
miRNA:   3'- cAAGGACCACaGccgGCCUCUGUaCG- -5'
25535 5' -55.9 NC_005337.1 + 5863 0.66 0.904946
Target:  5'- --cCCUGGUGgggagcgUGGCguugGGGGACAgGCg -3'
miRNA:   3'- caaGGACCACa------GCCGg---CCUCUGUaCG- -5'
25535 5' -55.9 NC_005337.1 + 79788 0.66 0.885076
Target:  5'- -cUCCcagaUGGUGUCGGacgaGGAguuuauggcGACGUGCc -3'
miRNA:   3'- caAGG----ACCACAGCCgg--CCU---------CUGUACG- -5'
25535 5' -55.9 NC_005337.1 + 93264 0.66 0.885076
Target:  5'- uGUUUaUGGUGgcgaGGCCGGGGG--UGCg -3'
miRNA:   3'- -CAAGgACCACag--CCGGCCUCUguACG- -5'
25535 5' -55.9 NC_005337.1 + 130529 0.66 0.882974
Target:  5'- aGUUCCUGGUGcgcgCGGgCGccaacgucaacgacGGGAUcgGCu -3'
miRNA:   3'- -CAAGGACCACa---GCCgGC--------------CUCUGuaCG- -5'
25535 5' -55.9 NC_005337.1 + 52699 0.66 0.877992
Target:  5'- -aUCCUGGUGUaCGcGCaGGAGuacgacccguACAUGUc -3'
miRNA:   3'- caAGGACCACA-GC-CGgCCUC----------UGUACG- -5'
25535 5' -55.9 NC_005337.1 + 78032 0.66 0.870686
Target:  5'- --gCCUc--GUCGGCCGGcGACAUGg -3'
miRNA:   3'- caaGGAccaCAGCCGGCCuCUGUACg -5'
25535 5' -55.9 NC_005337.1 + 45515 0.67 0.863162
Target:  5'- -cUCCacgucGGUGUCGGCgccgCGGAuGACGaGCg -3'
miRNA:   3'- caAGGa----CCACAGCCG----GCCU-CUGUaCG- -5'
25535 5' -55.9 NC_005337.1 + 42558 0.67 0.847487
Target:  5'- ---gCUGGUGcggcugCGGCUGGAGGCc-GCg -3'
miRNA:   3'- caagGACCACa-----GCCGGCCUCUGuaCG- -5'
25535 5' -55.9 NC_005337.1 + 61722 0.67 0.839349
Target:  5'- -cUCCUGGa----GCCGG-GACAUGCg -3'
miRNA:   3'- caAGGACCacagcCGGCCuCUGUACG- -5'
25535 5' -55.9 NC_005337.1 + 84672 0.67 0.839349
Target:  5'- --aUCUGGUcGUCGGaCGGGGcCGUGUu -3'
miRNA:   3'- caaGGACCA-CAGCCgGCCUCuGUACG- -5'
25535 5' -55.9 NC_005337.1 + 6129 0.67 0.831019
Target:  5'- --gCCcGGcgacaUGcUCGGCCaGGGACAUGCg -3'
miRNA:   3'- caaGGaCC-----AC-AGCCGGcCUCUGUACG- -5'
25535 5' -55.9 NC_005337.1 + 1432 0.67 0.831019
Target:  5'- --aCgUGGUGUauGCCGGcGAuCGUGCa -3'
miRNA:   3'- caaGgACCACAgcCGGCCuCU-GUACG- -5'
25535 5' -55.9 NC_005337.1 + 61053 0.67 0.822505
Target:  5'- -cUCCUGGUGgucCGGCCGaugguguuGAGcCgGUGCa -3'
miRNA:   3'- caAGGACCACa--GCCGGC--------CUCuG-UACG- -5'
25535 5' -55.9 NC_005337.1 + 46129 0.68 0.812937
Target:  5'- -gUCCUGGUcGggCGGCaccaGGAGaucgagcGCGUGCu -3'
miRNA:   3'- caAGGACCA-Ca-GCCGg---CCUC-------UGUACG- -5'
25535 5' -55.9 NC_005337.1 + 38697 0.68 0.804064
Target:  5'- --gCCUGGUGUcggcggCGGCCcgucguccugacgGGGGACAccgGCg -3'
miRNA:   3'- caaGGACCACA------GCCGG-------------CCUCUGUa--CG- -5'
25535 5' -55.9 NC_005337.1 + 32891 0.68 0.795943
Target:  5'- -aUCC-GGcUGUCGGCCGG-GAUcaGCg -3'
miRNA:   3'- caAGGaCC-ACAGCCGGCCuCUGuaCG- -5'
25535 5' -55.9 NC_005337.1 + 1367 0.68 0.786777
Target:  5'- -gUCCUgaggacggcGGUGUCGGCC--AGGCAgaUGCg -3'
miRNA:   3'- caAGGA---------CCACAGCCGGccUCUGU--ACG- -5'
25535 5' -55.9 NC_005337.1 + 45059 0.7 0.709144
Target:  5'- ---gCUGGgcgccgGcCGGCCGGAGAucCGUGCc -3'
miRNA:   3'- caagGACCa-----CaGCCGGCCUCU--GUACG- -5'
25535 5' -55.9 NC_005337.1 + 52205 0.7 0.677654
Target:  5'- uGUUCCUGGUGgagCGGCgcuccagCGG-GAUgAUGCa -3'
miRNA:   3'- -CAAGGACCACa--GCCG-------GCCuCUG-UACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.