miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25537 5' -63 NC_005337.1 + 132674 0.66 0.628367
Target:  5'- aCGGGAUCacgCCCCUGGacaacaucgucGCGCacaaccuGGGCCg -3'
miRNA:   3'- -GCCCUAG---GGGGGCCacu--------UGCG-------CCCGG- -5'
25537 5' -63 NC_005337.1 + 30365 0.66 0.627397
Target:  5'- gCGGGAUCUCgaCCUGGUacuucuugcaggugaGGAUGuCGaGGCCg -3'
miRNA:   3'- -GCCCUAGGG--GGGCCA---------------CUUGC-GC-CCGG- -5'
25537 5' -63 NC_005337.1 + 117325 0.66 0.623517
Target:  5'- gGGGAUCgCCgucaCGGUGGcgacggccaACGUcGGCCg -3'
miRNA:   3'- gCCCUAGgGGg---GCCACU---------UGCGcCCGG- -5'
25537 5' -63 NC_005337.1 + 10600 0.66 0.623517
Target:  5'- --cGGUCCCgCCgCGGggGAGCGgCGGcGCCa -3'
miRNA:   3'- gccCUAGGG-GG-GCCa-CUUGC-GCC-CGG- -5'
25537 5' -63 NC_005337.1 + 31617 0.66 0.613822
Target:  5'- aGGGG-CCgCCCUGcauGGCGCGGGCg -3'
miRNA:   3'- gCCCUaGG-GGGGCcacUUGCGCCCGg -5'
25537 5' -63 NC_005337.1 + 98697 0.66 0.604139
Target:  5'- gGGGAUCCgCCUCGcuaGGcauccgcucGCGCGGcGCCc -3'
miRNA:   3'- gCCCUAGG-GGGGCca-CU---------UGCGCC-CGG- -5'
25537 5' -63 NC_005337.1 + 89896 0.66 0.575228
Target:  5'- aGGc--CCCauCCCGGUGGGCGgCGGGgCg -3'
miRNA:   3'- gCCcuaGGG--GGGCCACUUGC-GCCCgG- -5'
25537 5' -63 NC_005337.1 + 55935 0.66 0.575228
Target:  5'- uCGaGAccgCgCCCCGGcUGGaccugcagcuugGCGCGGGCCa -3'
miRNA:   3'- -GCcCUa--GgGGGGCC-ACU------------UGCGCCCGG- -5'
25537 5' -63 NC_005337.1 + 108741 0.66 0.575228
Target:  5'- -cGGAUUCUCgCGGc--GCGUGGGCCg -3'
miRNA:   3'- gcCCUAGGGGgGCCacuUGCGCCCGG- -5'
25537 5' -63 NC_005337.1 + 125132 0.66 0.575228
Target:  5'- aGGaGGUCCUCCCGGccguCGCGcGGUa -3'
miRNA:   3'- gCC-CUAGGGGGGCCacuuGCGC-CCGg -5'
25537 5' -63 NC_005337.1 + 108958 0.67 0.556125
Target:  5'- uGGGGUCguacacgCgCCGGUcGACGCGcGGCCc -3'
miRNA:   3'- gCCCUAGg------GgGGCCAcUUGCGC-CCGG- -5'
25537 5' -63 NC_005337.1 + 108166 0.67 0.537211
Target:  5'- gCGGaGAUCgCCgCGGUGGACauccgGCGGcGCUu -3'
miRNA:   3'- -GCC-CUAGgGGgGCCACUUG-----CGCC-CGG- -5'
25537 5' -63 NC_005337.1 + 111123 0.67 0.537211
Target:  5'- gCGGGucagGUUCUCCCGGaggaagGGGCGCauGGCCg -3'
miRNA:   3'- -GCCC----UAGGGGGGCCa-----CUUGCGc-CCGG- -5'
25537 5' -63 NC_005337.1 + 34130 0.67 0.518524
Target:  5'- aGGGAgaaCUCCCGcacGAACGCGGGgUg -3'
miRNA:   3'- gCCCUag-GGGGGCca-CUUGCGCCCgG- -5'
25537 5' -63 NC_005337.1 + 68122 0.68 0.509277
Target:  5'- uCGGGGUCgCggggCCGGUGGccGCGCGcGCCc -3'
miRNA:   3'- -GCCCUAGgGg---GGCCACU--UGCGCcCGG- -5'
25537 5' -63 NC_005337.1 + 68465 0.68 0.503762
Target:  5'- cCGGGAUCUCCUgcuucugcagcaugaCGGUGcgcaccgggGGCGCGGacagcGCCg -3'
miRNA:   3'- -GCCCUAGGGGG---------------GCCAC---------UUGCGCC-----CGG- -5'
25537 5' -63 NC_005337.1 + 3192 0.68 0.5001
Target:  5'- gGGGcGUCUUCCCcGUGAACGagcgcaGGGUCa -3'
miRNA:   3'- gCCC-UAGGGGGGcCACUUGCg-----CCCGG- -5'
25537 5' -63 NC_005337.1 + 112071 0.68 0.487377
Target:  5'- uCGcGGAUgCUCUCGGUGAGCccgcugugccgcaCGGGCCc -3'
miRNA:   3'- -GC-CCUAgGGGGGCCACUUGc------------GCCCGG- -5'
25537 5' -63 NC_005337.1 + 84064 0.68 0.481971
Target:  5'- uGGGGUU-CCCCGuGUGcaGACGCGcGCCg -3'
miRNA:   3'- gCCCUAGgGGGGC-CAC--UUGCGCcCGG- -5'
25537 5' -63 NC_005337.1 + 102981 0.68 0.481971
Target:  5'- aCGGGuacuucugCCCCUCGGacgugcccGAGCGCGGcCCg -3'
miRNA:   3'- -GCCCua------GGGGGGCCa-------CUUGCGCCcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.