Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25585 | 3' | -58.1 | NC_005337.1 | + | 122599 | 0.66 | 0.808795 |
Target: 5'- aCCUgGAccacgCGgGCGGCGGCGUgu-UCu -3' miRNA: 3'- aGGAaCUa----GCgCGCCGCCGCGacuAG- -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 101238 | 0.66 | 0.799936 |
Target: 5'- gUCCgcgcgcgUGcUCGCGCuGGaCGGCGCggacgcgaaGAUCg -3' miRNA: 3'- -AGGa------ACuAGCGCG-CC-GCCGCGa--------CUAG- -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 89870 | 0.66 | 0.799936 |
Target: 5'- cUCCgaGcgCGCGCuGGCGauggagagcGCGCUGuUCa -3' miRNA: 3'- -AGGaaCuaGCGCG-CCGC---------CGCGACuAG- -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 28475 | 0.66 | 0.799936 |
Target: 5'- cUCCUggagcacgGAUgcggcCGCGCGGCG-CGC-GGUCg -3' miRNA: 3'- -AGGAa-------CUA-----GCGCGCCGCcGCGaCUAG- -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 47958 | 0.66 | 0.799936 |
Target: 5'- gCCaUGuUCGCGCGcgaguGCGGCGCgGAc- -3' miRNA: 3'- aGGaACuAGCGCGC-----CGCCGCGaCUag -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 80403 | 0.66 | 0.790925 |
Target: 5'- gCCgcugUGucugcUCGCgGUGGCGuCGCUGGUCg -3' miRNA: 3'- aGGa---ACu----AGCG-CGCCGCcGCGACUAG- -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 11504 | 0.66 | 0.788194 |
Target: 5'- gUCCaUGAUcCGCggccaguacuccacGCGGuCGGCGUgccgGAUCa -3' miRNA: 3'- -AGGaACUA-GCG--------------CGCC-GCCGCGa---CUAG- -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 122396 | 0.66 | 0.781772 |
Target: 5'- ----aGGUCgugcuGCGCGGCGGCGCgcgGcgCc -3' miRNA: 3'- aggaaCUAG-----CGCGCCGCCGCGa--CuaG- -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 49358 | 0.66 | 0.781772 |
Target: 5'- cUUCUgcgGcgCGUGCGGCGGCuaCUGuUCg -3' miRNA: 3'- -AGGAa--CuaGCGCGCCGCCGc-GACuAG- -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 36132 | 0.66 | 0.772485 |
Target: 5'- cCCU--GUCGUGC-GCGGCGUgcgGGUCc -3' miRNA: 3'- aGGAacUAGCGCGcCGCCGCGa--CUAG- -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 40541 | 0.66 | 0.772485 |
Target: 5'- gCCgcgg-CGCGCGGUGGUGC-GGUUc -3' miRNA: 3'- aGGaacuaGCGCGCCGCCGCGaCUAG- -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 30645 | 0.66 | 0.763073 |
Target: 5'- gCCgagGAUgGCGC-GCGGCGCgGAg- -3' miRNA: 3'- aGGaa-CUAgCGCGcCGCCGCGaCUag -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 68802 | 0.66 | 0.763073 |
Target: 5'- cUUCUUGAagUCGacgaauagGUGGCGGCGCUcGGUg -3' miRNA: 3'- -AGGAACU--AGCg-------CGCCGCCGCGA-CUAg -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 121562 | 0.66 | 0.763073 |
Target: 5'- cUCCUcGA--GCGCGGCGcGCGCgcgGAc- -3' miRNA: 3'- -AGGAaCUagCGCGCCGC-CGCGa--CUag -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 120454 | 0.67 | 0.753546 |
Target: 5'- cCCUgcgGggCGCGCucgaGCGcGCGCUGgAUCg -3' miRNA: 3'- aGGAa--CuaGCGCGc---CGC-CGCGAC-UAG- -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 44595 | 0.67 | 0.753546 |
Target: 5'- cCCUguacauggacaUGAUCGCGCuGGagaaccugaaGGCGCUGcUCc -3' miRNA: 3'- aGGA-----------ACUAGCGCG-CCg---------CCGCGACuAG- -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 29535 | 0.67 | 0.752587 |
Target: 5'- gUCU---UCGCGCGGCGGCcgugcacccacucGCUGcUCa -3' miRNA: 3'- aGGAacuAGCGCGCCGCCG-------------CGACuAG- -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 73502 | 0.67 | 0.743912 |
Target: 5'- ----cGGUCGUGaaGGCGGUGCUGggCa -3' miRNA: 3'- aggaaCUAGCGCg-CCGCCGCGACuaG- -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 94018 | 0.67 | 0.743912 |
Target: 5'- gUCCUacugucucgUGGUgGCGCGGCgcGGCGCg---- -3' miRNA: 3'- -AGGA---------ACUAgCGCGCCG--CCGCGacuag -5' |
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25585 | 3' | -58.1 | NC_005337.1 | + | 59861 | 0.67 | 0.734181 |
Target: 5'- ----cGAUgCGCcgguagacgaaGCGGUGGCGCUGAUg -3' miRNA: 3'- aggaaCUA-GCG-----------CGCCGCCGCGACUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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