miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25585 3' -58.1 NC_005337.1 + 122599 0.66 0.808795
Target:  5'- aCCUgGAccacgCGgGCGGCGGCGUgu-UCu -3'
miRNA:   3'- aGGAaCUa----GCgCGCCGCCGCGacuAG- -5'
25585 3' -58.1 NC_005337.1 + 101238 0.66 0.799936
Target:  5'- gUCCgcgcgcgUGcUCGCGCuGGaCGGCGCggacgcgaaGAUCg -3'
miRNA:   3'- -AGGa------ACuAGCGCG-CC-GCCGCGa--------CUAG- -5'
25585 3' -58.1 NC_005337.1 + 89870 0.66 0.799936
Target:  5'- cUCCgaGcgCGCGCuGGCGauggagagcGCGCUGuUCa -3'
miRNA:   3'- -AGGaaCuaGCGCG-CCGC---------CGCGACuAG- -5'
25585 3' -58.1 NC_005337.1 + 28475 0.66 0.799936
Target:  5'- cUCCUggagcacgGAUgcggcCGCGCGGCG-CGC-GGUCg -3'
miRNA:   3'- -AGGAa-------CUA-----GCGCGCCGCcGCGaCUAG- -5'
25585 3' -58.1 NC_005337.1 + 47958 0.66 0.799936
Target:  5'- gCCaUGuUCGCGCGcgaguGCGGCGCgGAc- -3'
miRNA:   3'- aGGaACuAGCGCGC-----CGCCGCGaCUag -5'
25585 3' -58.1 NC_005337.1 + 80403 0.66 0.790925
Target:  5'- gCCgcugUGucugcUCGCgGUGGCGuCGCUGGUCg -3'
miRNA:   3'- aGGa---ACu----AGCG-CGCCGCcGCGACUAG- -5'
25585 3' -58.1 NC_005337.1 + 11504 0.66 0.788194
Target:  5'- gUCCaUGAUcCGCggccaguacuccacGCGGuCGGCGUgccgGAUCa -3'
miRNA:   3'- -AGGaACUA-GCG--------------CGCC-GCCGCGa---CUAG- -5'
25585 3' -58.1 NC_005337.1 + 122396 0.66 0.781772
Target:  5'- ----aGGUCgugcuGCGCGGCGGCGCgcgGcgCc -3'
miRNA:   3'- aggaaCUAG-----CGCGCCGCCGCGa--CuaG- -5'
25585 3' -58.1 NC_005337.1 + 49358 0.66 0.781772
Target:  5'- cUUCUgcgGcgCGUGCGGCGGCuaCUGuUCg -3'
miRNA:   3'- -AGGAa--CuaGCGCGCCGCCGc-GACuAG- -5'
25585 3' -58.1 NC_005337.1 + 36132 0.66 0.772485
Target:  5'- cCCU--GUCGUGC-GCGGCGUgcgGGUCc -3'
miRNA:   3'- aGGAacUAGCGCGcCGCCGCGa--CUAG- -5'
25585 3' -58.1 NC_005337.1 + 40541 0.66 0.772485
Target:  5'- gCCgcgg-CGCGCGGUGGUGC-GGUUc -3'
miRNA:   3'- aGGaacuaGCGCGCCGCCGCGaCUAG- -5'
25585 3' -58.1 NC_005337.1 + 30645 0.66 0.763073
Target:  5'- gCCgagGAUgGCGC-GCGGCGCgGAg- -3'
miRNA:   3'- aGGaa-CUAgCGCGcCGCCGCGaCUag -5'
25585 3' -58.1 NC_005337.1 + 68802 0.66 0.763073
Target:  5'- cUUCUUGAagUCGacgaauagGUGGCGGCGCUcGGUg -3'
miRNA:   3'- -AGGAACU--AGCg-------CGCCGCCGCGA-CUAg -5'
25585 3' -58.1 NC_005337.1 + 121562 0.66 0.763073
Target:  5'- cUCCUcGA--GCGCGGCGcGCGCgcgGAc- -3'
miRNA:   3'- -AGGAaCUagCGCGCCGC-CGCGa--CUag -5'
25585 3' -58.1 NC_005337.1 + 120454 0.67 0.753546
Target:  5'- cCCUgcgGggCGCGCucgaGCGcGCGCUGgAUCg -3'
miRNA:   3'- aGGAa--CuaGCGCGc---CGC-CGCGAC-UAG- -5'
25585 3' -58.1 NC_005337.1 + 44595 0.67 0.753546
Target:  5'- cCCUguacauggacaUGAUCGCGCuGGagaaccugaaGGCGCUGcUCc -3'
miRNA:   3'- aGGA-----------ACUAGCGCG-CCg---------CCGCGACuAG- -5'
25585 3' -58.1 NC_005337.1 + 29535 0.67 0.752587
Target:  5'- gUCU---UCGCGCGGCGGCcgugcacccacucGCUGcUCa -3'
miRNA:   3'- aGGAacuAGCGCGCCGCCG-------------CGACuAG- -5'
25585 3' -58.1 NC_005337.1 + 73502 0.67 0.743912
Target:  5'- ----cGGUCGUGaaGGCGGUGCUGggCa -3'
miRNA:   3'- aggaaCUAGCGCg-CCGCCGCGACuaG- -5'
25585 3' -58.1 NC_005337.1 + 94018 0.67 0.743912
Target:  5'- gUCCUacugucucgUGGUgGCGCGGCgcGGCGCg---- -3'
miRNA:   3'- -AGGA---------ACUAgCGCGCCG--CCGCGacuag -5'
25585 3' -58.1 NC_005337.1 + 59861 0.67 0.734181
Target:  5'- ----cGAUgCGCcgguagacgaaGCGGUGGCGCUGAUg -3'
miRNA:   3'- aggaaCUA-GCG-----------CGCCGCCGCGACUAg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.