miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25585 3' -58.1 NC_005337.1 + 78634 0.68 0.67426
Target:  5'- gUUCgaGGUgaGCGCGGUGGgGCUGAa- -3'
miRNA:   3'- -AGGaaCUAg-CGCGCCGCCgCGACUag -5'
25585 3' -58.1 NC_005337.1 + 90979 0.69 0.643717
Target:  5'- gUCCUcgUGGUCgaacaGCGCgaagguguagcaGGUGGCGCUGAg- -3'
miRNA:   3'- -AGGA--ACUAG-----CGCG------------CCGCCGCGACUag -5'
25585 3' -58.1 NC_005337.1 + 97061 0.69 0.643717
Target:  5'- gCCacgcaCGCGCGGCGcGCGgUGGUCu -3'
miRNA:   3'- aGGaacuaGCGCGCCGC-CGCgACUAG- -5'
25585 3' -58.1 NC_005337.1 + 130141 0.69 0.643717
Target:  5'- ---gUGGUCGCGCGcGCuGGCGCUcGcgCg -3'
miRNA:   3'- aggaACUAGCGCGC-CG-CCGCGA-CuaG- -5'
25585 3' -58.1 NC_005337.1 + 76397 0.68 0.653918
Target:  5'- aCCgug--CGCGCGG-GGCGCUGGc- -3'
miRNA:   3'- aGGaacuaGCGCGCCgCCGCGACUag -5'
25585 3' -58.1 NC_005337.1 + 99378 0.68 0.653918
Target:  5'- cCCgUGGaCGCGCGGCaccaccugccGGUGCUGcgCa -3'
miRNA:   3'- aGGaACUaGCGCGCCG----------CCGCGACuaG- -5'
25585 3' -58.1 NC_005337.1 + 90495 0.68 0.653918
Target:  5'- aCCUUGGUCaggauGCGCGaGaCGGUGUgcuUGGUCa -3'
miRNA:   3'- aGGAACUAG-----CGCGC-C-GCCGCG---ACUAG- -5'
25585 3' -58.1 NC_005337.1 + 80664 0.68 0.664102
Target:  5'- cUCCUgGAUCuGCGCGGC-GCGCU--UCc -3'
miRNA:   3'- -AGGAaCUAG-CGCGCCGcCGCGAcuAG- -5'
25585 3' -58.1 NC_005337.1 + 74487 0.68 0.67426
Target:  5'- gCCUcgUGGUCGCGUGcCGGCGCcGGc- -3'
miRNA:   3'- aGGA--ACUAGCGCGCcGCCGCGaCUag -5'
25585 3' -58.1 NC_005337.1 + 30385 0.69 0.632485
Target:  5'- gUCCaUGucgCGCGCGGCcagcagcuGGCGCUuguucagGAUCa -3'
miRNA:   3'- -AGGaACua-GCGCGCCG--------CCGCGA-------CUAG- -5'
25585 3' -58.1 NC_005337.1 + 61916 0.69 0.623295
Target:  5'- gUCCgcgcGAUCGCGCGGaacuuGGCGUUGc-- -3'
miRNA:   3'- -AGGaa--CUAGCGCGCCg----CCGCGACuag -5'
25585 3' -58.1 NC_005337.1 + 63483 0.69 0.6029
Target:  5'- aCCUgaccGGUCGCGUGaaGGCGCUG-UCc -3'
miRNA:   3'- aGGAa---CUAGCGCGCcgCCGCGACuAG- -5'
25585 3' -58.1 NC_005337.1 + 99012 0.72 0.456114
Target:  5'- cCCgaGGUgCGCGCGGCcugcgaGGCGCUGGa- -3'
miRNA:   3'- aGGaaCUA-GCGCGCCG------CCGCGACUag -5'
25585 3' -58.1 NC_005337.1 + 80033 0.72 0.465358
Target:  5'- gUCCguggUGAacacgcUgGCGCGGCGGaCGCUG-UCa -3'
miRNA:   3'- -AGGa---ACU------AgCGCGCCGCC-GCGACuAG- -5'
25585 3' -58.1 NC_005337.1 + 117882 0.71 0.474699
Target:  5'- gUCCUuaccucagugUGcgUGUGCugGGCGGCGCUGGUg -3'
miRNA:   3'- -AGGA----------ACuaGCGCG--CCGCCGCGACUAg -5'
25585 3' -58.1 NC_005337.1 + 74929 0.71 0.493655
Target:  5'- gCCUUcGcgCGCGCGGCcGCGCgGAUg -3'
miRNA:   3'- aGGAA-CuaGCGCGCCGcCGCGaCUAg -5'
25585 3' -58.1 NC_005337.1 + 39497 0.71 0.522714
Target:  5'- gCCgccGAUCGaC-CGGCGGUGCUGGUg -3'
miRNA:   3'- aGGaa-CUAGC-GcGCCGCCGCGACUAg -5'
25585 3' -58.1 NC_005337.1 + 1426 0.7 0.532549
Target:  5'- gUCUgGGUCugcgaGCGCGGCGGCGCcGAg- -3'
miRNA:   3'- aGGAaCUAG-----CGCGCCGCCGCGaCUag -5'
25585 3' -58.1 NC_005337.1 + 47611 0.7 0.552408
Target:  5'- gCCgcg--CGCGCGGCcGCGCUGAa- -3'
miRNA:   3'- aGGaacuaGCGCGCCGcCGCGACUag -5'
25585 3' -58.1 NC_005337.1 + 127775 0.7 0.58259
Target:  5'- gUCUUGAcggagCGCGUGGUgcgGGUGCUGGUg -3'
miRNA:   3'- aGGAACUa----GCGCGCCG---CCGCGACUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.