miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25585 3' -58.1 NC_005337.1 + 62626 0.67 0.724361
Target:  5'- gCgUUGAagUGCGCGGCcaGGCGCUGc-- -3'
miRNA:   3'- aGgAACUa-GCGCGCCG--CCGCGACuag -5'
25585 3' -58.1 NC_005337.1 + 73452 0.67 0.724361
Target:  5'- gUUCU---UCGCGCGGCGGUGCcGcgUg -3'
miRNA:   3'- -AGGAacuAGCGCGCCGCCGCGaCuaG- -5'
25585 3' -58.1 NC_005337.1 + 133460 0.67 0.714463
Target:  5'- cCCgcg--CGCGCGGaCGGCuccgcggaGCUGGUCu -3'
miRNA:   3'- aGGaacuaGCGCGCC-GCCG--------CGACUAG- -5'
25585 3' -58.1 NC_005337.1 + 98717 0.67 0.714463
Target:  5'- aUCCgc--UCGCGCGGCGcccugcgcGUGCUGAccgUCa -3'
miRNA:   3'- -AGGaacuAGCGCGCCGC--------CGCGACU---AG- -5'
25585 3' -58.1 NC_005337.1 + 42537 0.67 0.714463
Target:  5'- cCCgccgGA-CGCGCuGCgGGCGCUGGUg -3'
miRNA:   3'- aGGaa--CUaGCGCGcCG-CCGCGACUAg -5'
25585 3' -58.1 NC_005337.1 + 133460 0.67 0.714463
Target:  5'- cCCgcg--CGCGCGGaCGGCuccgcggaGCUGGUCu -3'
miRNA:   3'- aGGaacuaGCGCGCC-GCCG--------CGACUAG- -5'
25585 3' -58.1 NC_005337.1 + 105101 0.67 0.714463
Target:  5'- cUCUgcGGUCGCGCGGCGcCGCg---- -3'
miRNA:   3'- -AGGaaCUAGCGCGCCGCcGCGacuag -5'
25585 3' -58.1 NC_005337.1 + 76054 0.67 0.704495
Target:  5'- cUCCaUGAccgcCGCGCGGCGGUacGCcgcGGUCu -3'
miRNA:   3'- -AGGaACUa---GCGCGCCGCCG--CGa--CUAG- -5'
25585 3' -58.1 NC_005337.1 + 64242 0.68 0.694465
Target:  5'- cUCUUUGcggCGCuGCGGCGGCuCUGGg- -3'
miRNA:   3'- -AGGAACua-GCG-CGCCGCCGcGACUag -5'
25585 3' -58.1 NC_005337.1 + 95299 0.68 0.684384
Target:  5'- gUCCguaggCGCGCGGCG-CGCUGuugCg -3'
miRNA:   3'- -AGGaacuaGCGCGCCGCcGCGACua-G- -5'
25585 3' -58.1 NC_005337.1 + 36491 0.68 0.684384
Target:  5'- gCCUUGGcCGCgGCcGCGGCGCUcggcgcgacGAUCc -3'
miRNA:   3'- aGGAACUaGCG-CGcCGCCGCGA---------CUAG- -5'
25585 3' -58.1 NC_005337.1 + 78634 0.68 0.67426
Target:  5'- gUUCgaGGUgaGCGCGGUGGgGCUGAa- -3'
miRNA:   3'- -AGGaaCUAg-CGCGCCGCCgCGACUag -5'
25585 3' -58.1 NC_005337.1 + 74487 0.68 0.67426
Target:  5'- gCCUcgUGGUCGCGUGcCGGCGCcGGc- -3'
miRNA:   3'- aGGA--ACUAGCGCGCcGCCGCGaCUag -5'
25585 3' -58.1 NC_005337.1 + 78864 0.68 0.673246
Target:  5'- gUCCUUGAUgCGCGUGaGCugacgcaGGCGCUuGUUg -3'
miRNA:   3'- -AGGAACUA-GCGCGC-CG-------CCGCGAcUAG- -5'
25585 3' -58.1 NC_005337.1 + 80664 0.68 0.664102
Target:  5'- cUCCUgGAUCuGCGCGGC-GCGCU--UCc -3'
miRNA:   3'- -AGGAaCUAG-CGCGCCGcCGCGAcuAG- -5'
25585 3' -58.1 NC_005337.1 + 99378 0.68 0.653918
Target:  5'- cCCgUGGaCGCGCGGCaccaccugccGGUGCUGcgCa -3'
miRNA:   3'- aGGaACUaGCGCGCCG----------CCGCGACuaG- -5'
25585 3' -58.1 NC_005337.1 + 48169 0.68 0.653918
Target:  5'- cUCCUcg--CGCGCGGaGGCGCUGcugCg -3'
miRNA:   3'- -AGGAacuaGCGCGCCgCCGCGACua-G- -5'
25585 3' -58.1 NC_005337.1 + 90495 0.68 0.653918
Target:  5'- aCCUUGGUCaggauGCGCGaGaCGGUGUgcuUGGUCa -3'
miRNA:   3'- aGGAACUAG-----CGCGC-C-GCCGCG---ACUAG- -5'
25585 3' -58.1 NC_005337.1 + 76397 0.68 0.653918
Target:  5'- aCCgug--CGCGCGG-GGCGCUGGc- -3'
miRNA:   3'- aGGaacuaGCGCGCCgCCGCGACUag -5'
25585 3' -58.1 NC_005337.1 + 10266 0.68 0.653918
Target:  5'- gCCUccAUCG-GCGGCGGCGCgu-UCa -3'
miRNA:   3'- aGGAacUAGCgCGCCGCCGCGacuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.