miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 51169 0.66 0.803038
Target:  5'- gGUG-GGGUCCAAcCUGGccauCGUCACCc -3'
miRNA:   3'- -CACgCCCAGGUUcGAUCu---GCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 33676 0.66 0.803038
Target:  5'- -aGCGaGGcgCCgAGGCcggcGGGCGCCACCu -3'
miRNA:   3'- caCGC-CCa-GG-UUCGa---UCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 124925 0.66 0.794092
Target:  5'- -cGCGcGUCCAGGCgacGCGUCAUCGc -3'
miRNA:   3'- caCGCcCAGGUUCGaucUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 14706 0.66 0.794092
Target:  5'- gGUGCGGGUaCCu-GCUcuccacGACGCCcaucGCCa -3'
miRNA:   3'- -CACGCCCA-GGuuCGAu-----CUGCGG----UGGc -5'
25600 3' -58.2 NC_005337.1 + 9578 0.66 0.785
Target:  5'- uGUGCGaGGucUCCGGGUUcgcguGAuUGCCGCCGg -3'
miRNA:   3'- -CACGC-CC--AGGUUCGAu----CU-GCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 133642 0.66 0.785
Target:  5'- cGUGCaGGacgucgCCGcGCUGGACGCCgACgCGg -3'
miRNA:   3'- -CACGcCCa-----GGUuCGAUCUGCGG-UG-GC- -5'
25600 3' -58.2 NC_005337.1 + 49934 0.66 0.785
Target:  5'- -cGCGGGgacagcacgaCCAGGCUGGAgGUguuCACCu -3'
miRNA:   3'- caCGCCCa---------GGUUCGAUCUgCG---GUGGc -5'
25600 3' -58.2 NC_005337.1 + 834 0.66 0.785
Target:  5'- -cGCGGGcCCGGGCUcGACGaaGgCGg -3'
miRNA:   3'- caCGCCCaGGUUCGAuCUGCggUgGC- -5'
25600 3' -58.2 NC_005337.1 + 95758 0.66 0.785
Target:  5'- -gGCGGGcccugcaCCAGGCgcgcccGGGCGgCCACCu -3'
miRNA:   3'- caCGCCCa------GGUUCGa-----UCUGC-GGUGGc -5'
25600 3' -58.2 NC_005337.1 + 834 0.66 0.785
Target:  5'- -cGCGGGcCCGGGCUcGACGaaGgCGg -3'
miRNA:   3'- caCGCCCaGGUUCGAuCUGCggUgGC- -5'
25600 3' -58.2 NC_005337.1 + 133642 0.66 0.785
Target:  5'- cGUGCaGGacgucgCCGcGCUGGACGCCgACgCGg -3'
miRNA:   3'- -CACGcCCa-----GGUuCGAUCUGCGG-UG-GC- -5'
25600 3' -58.2 NC_005337.1 + 22099 0.66 0.785
Target:  5'- cGUGUGGGcguuccucgUCAAGCgGGACGUCGgCGg -3'
miRNA:   3'- -CACGCCCa--------GGUUCGaUCUGCGGUgGC- -5'
25600 3' -58.2 NC_005337.1 + 45961 0.66 0.775772
Target:  5'- -cGUGGcGUCCAcGCU-GACGUCcCCGa -3'
miRNA:   3'- caCGCC-CAGGUuCGAuCUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 31423 0.66 0.775772
Target:  5'- aGUGCGGGUgCGuGC-GGAaGCUGCCGu -3'
miRNA:   3'- -CACGCCCAgGUuCGaUCUgCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 109187 0.66 0.775772
Target:  5'- -cGCGGG-CgGAGCUcGGCGUCGCg- -3'
miRNA:   3'- caCGCCCaGgUUCGAuCUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 89187 0.66 0.775772
Target:  5'- -aGgGGGUgCCGGGCgcu-CGCCGCCc -3'
miRNA:   3'- caCgCCCA-GGUUCGaucuGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 85393 0.66 0.774842
Target:  5'- gGUGCGuGGUcuggccgCCGGGCggGGACGCgCACuCGu -3'
miRNA:   3'- -CACGC-CCA-------GGUUCGa-UCUGCG-GUG-GC- -5'
25600 3' -58.2 NC_005337.1 + 1654 0.66 0.766417
Target:  5'- -cGCGGcgaCGAGCuUGGcCGCCGCCGc -3'
miRNA:   3'- caCGCCcagGUUCG-AUCuGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 771 0.66 0.766417
Target:  5'- -gGCGG--CCAuguGCUGcGCGCCGCCGa -3'
miRNA:   3'- caCGCCcaGGUu--CGAUcUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 11920 0.66 0.766417
Target:  5'- -cGUGGcGUCCGAuGCggcacccGGGCGCgCGCCGu -3'
miRNA:   3'- caCGCC-CAGGUU-CGa------UCUGCG-GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.