miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 17793 0.66 0.894247
Target:  5'- cUCCAGGCGCGucugucGCgUGAAguacuCCucgauGCGCg -3'
miRNA:   3'- -AGGUCCGCGCua----UGgACUU-----GGu----CGUG- -5'
25600 5' -55.7 NC_005337.1 + 877 0.66 0.894247
Target:  5'- gCCGGGCGgaaGAgcgcGCCgagcagGAGCCcgAGCGCg -3'
miRNA:   3'- aGGUCCGCg--CUa---UGGa-----CUUGG--UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 112682 0.66 0.894247
Target:  5'- gUCCAGGuUGCGGUcgaugGCgUGGAUCAuGUACu -3'
miRNA:   3'- -AGGUCC-GCGCUA-----UGgACUUGGU-CGUG- -5'
25600 5' -55.7 NC_005337.1 + 52975 0.66 0.894247
Target:  5'- cUCCGcGGagauGCGGUugUUGAGCguGUACg -3'
miRNA:   3'- -AGGU-CCg---CGCUAugGACUUGguCGUG- -5'
25600 5' -55.7 NC_005337.1 + 126940 0.66 0.894247
Target:  5'- -gCGGGCGCGG-ACgUGAACgC-GCGCg -3'
miRNA:   3'- agGUCCGCGCUaUGgACUUG-GuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 877 0.66 0.894247
Target:  5'- gCCGGGCGgaaGAgcgcGCCgagcagGAGCCcgAGCGCg -3'
miRNA:   3'- aGGUCCGCg--CUa---UGGa-----CUUGG--UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 65790 0.66 0.894247
Target:  5'- gCCAGcaGCGCGGcGCCcGGugCGGCGg -3'
miRNA:   3'- aGGUC--CGCGCUaUGGaCUugGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 11742 0.66 0.894247
Target:  5'- -gCAGcGCGCGucgccgcGCCaGGGCCAGCAg -3'
miRNA:   3'- agGUC-CGCGCua-----UGGaCUUGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 122534 0.66 0.887392
Target:  5'- cCCuGGCGCGGcgacgcGCgCUGcAGCCGGUGCu -3'
miRNA:   3'- aGGuCCGCGCUa-----UG-GAC-UUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 109583 0.66 0.887392
Target:  5'- cCCAGGUGCuuGAagcGCCUGAG-CAGCGu -3'
miRNA:   3'- aGGUCCGCG--CUa--UGGACUUgGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 65047 0.66 0.887392
Target:  5'- gUCCAGGCGCGcgcgcacguUCUGGAaguCCGuGCGCc -3'
miRNA:   3'- -AGGUCCGCGCuau------GGACUU---GGU-CGUG- -5'
25600 5' -55.7 NC_005337.1 + 69225 0.66 0.887392
Target:  5'- uUCCAGaacguGCGCGcgcGCCUGGACguGC-Cg -3'
miRNA:   3'- -AGGUC-----CGCGCua-UGGACUUGguCGuG- -5'
25600 5' -55.7 NC_005337.1 + 41810 0.66 0.887392
Target:  5'- gUCgAGGCGUuc-GCCagGAACCGGCGg -3'
miRNA:   3'- -AGgUCCGCGcuaUGGa-CUUGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 24299 0.66 0.887392
Target:  5'- --aGGGCGUGGUGCUcGAgaaCAGCACc -3'
miRNA:   3'- aggUCCGCGCUAUGGaCUug-GUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 53699 0.66 0.887392
Target:  5'- gCCGGGCGCGu--CCUaaauAGCCcaugaAGCGCa -3'
miRNA:   3'- aGGUCCGCGCuauGGAc---UUGG-----UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 9924 0.66 0.880302
Target:  5'- -gCGGGCcaGCGcgGCCUGAugCGaucGCGCc -3'
miRNA:   3'- agGUCCG--CGCuaUGGACUugGU---CGUG- -5'
25600 5' -55.7 NC_005337.1 + 65984 0.66 0.880302
Target:  5'- gCCucuGGUGCGAgGCCgugcgucccgUGGGCgAGCGCg -3'
miRNA:   3'- aGGu--CCGCGCUaUGG----------ACUUGgUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 74210 0.66 0.880302
Target:  5'- -aCAGGguCGCGcaccACCUGAACCugugggAGCACa -3'
miRNA:   3'- agGUCC--GCGCua--UGGACUUGG------UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 50599 0.66 0.880302
Target:  5'- cCCAGacCGCGAUcgacgACCUGcGCCGGCuGCu -3'
miRNA:   3'- aGGUCc-GCGCUA-----UGGACuUGGUCG-UG- -5'
25600 5' -55.7 NC_005337.1 + 62216 0.66 0.872983
Target:  5'- uUCC-GGCGgGAcacggggaUGCCgauguGCCGGCACa -3'
miRNA:   3'- -AGGuCCGCgCU--------AUGGacu--UGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.