miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25645 5' -56.4 NC_005337.1 + 116616 0.65 0.888754
Target:  5'- uGCgGCGCGuGGAcgugucGCCCGccaaagaccucaccAGA-CGGGCg -3'
miRNA:   3'- -CGaCGCGCuCCU------CGGGU--------------UCUaGCUCG- -5'
25645 5' -56.4 NC_005337.1 + 74676 0.66 0.869511
Target:  5'- aCUGCGUGAc--GCgCGAGGUCGAGg -3'
miRNA:   3'- cGACGCGCUccuCGgGUUCUAGCUCg -5'
25645 5' -56.4 NC_005337.1 + 94906 0.66 0.857362
Target:  5'- aCUGCGCcacgguggcgacgaaGAGGAuGCCgCAcuuccccuGGUCGGGCa -3'
miRNA:   3'- cGACGCG---------------CUCCU-CGG-GUu-------CUAGCUCG- -5'
25645 5' -56.4 NC_005337.1 + 103928 0.66 0.853456
Target:  5'- cCUGUccGCGGGGcugguguacgAGCCCGAGGUCGucgaucuGGUg -3'
miRNA:   3'- cGACG--CGCUCC----------UCGGGUUCUAGC-------UCG- -5'
25645 5' -56.4 NC_005337.1 + 84221 0.66 0.883921
Target:  5'- uGCUGUGCGGGcGcGGCCUg----CGGGCa -3'
miRNA:   3'- -CGACGCGCUC-C-UCGGGuucuaGCUCG- -5'
25645 5' -56.4 NC_005337.1 + 19581 0.66 0.883921
Target:  5'- aGCcGCGCGAGGAucuccacugcGUCCAgcGGAgaggcggccUCGAGg -3'
miRNA:   3'- -CGaCGCGCUCCU----------CGGGU--UCU---------AGCUCg -5'
25645 5' -56.4 NC_005337.1 + 87617 0.66 0.883921
Target:  5'- uGCUGCGCGAucgcGcGcAGCCCcgacucgcgGAGGUUGGuGCg -3'
miRNA:   3'- -CGACGCGCU----C-C-UCGGG---------UUCUAGCU-CG- -5'
25645 5' -56.4 NC_005337.1 + 47673 0.66 0.854241
Target:  5'- uGCgaggGCGCGAucgugcgccugcGGuccguGUCCGAGAUCGuGGCc -3'
miRNA:   3'- -CGa---CGCGCU------------CCu----CGGGUUCUAGC-UCG- -5'
25645 5' -56.4 NC_005337.1 + 46909 0.66 0.876826
Target:  5'- --gGUGUGucuGGAGCCCGAccUCGAGg -3'
miRNA:   3'- cgaCGCGCu--CCUCGGGUUcuAGCUCg -5'
25645 5' -56.4 NC_005337.1 + 124233 0.66 0.876826
Target:  5'- cCUGgGaCGAcGAGUcguccuccgauuCCGGGAUCGAGCa -3'
miRNA:   3'- cGACgC-GCUcCUCG------------GGUUCUAGCUCG- -5'
25645 5' -56.4 NC_005337.1 + 37207 0.66 0.869511
Target:  5'- cGCgGCGCGccuugaAGGAGUCCAcgaAGAagcgcaUGAGCa -3'
miRNA:   3'- -CGaCGCGC------UCCUCGGGU---UCUa-----GCUCG- -5'
25645 5' -56.4 NC_005337.1 + 101015 0.66 0.865018
Target:  5'- --cGCGCGGGaaGAGCuCCAuccugcagaccaucgAGAUCGuGCu -3'
miRNA:   3'- cgaCGCGCUC--CUCG-GGU---------------UCUAGCuCG- -5'
25645 5' -56.4 NC_005337.1 + 828 0.66 0.869511
Target:  5'- --cGCGCGcGcGGGCCCGGGcUCGAcgaagGCg -3'
miRNA:   3'- cgaCGCGCuC-CUCGGGUUCuAGCU-----CG- -5'
25645 5' -56.4 NC_005337.1 + 124120 0.66 0.876105
Target:  5'- cGCUGgagaCGcCGAGGAagaugacauggacGCCCAGGAcggcgaGAGCg -3'
miRNA:   3'- -CGAC----GC-GCUCCU-------------CGGGUUCUag----CUCG- -5'
25645 5' -56.4 NC_005337.1 + 14063 0.66 0.861981
Target:  5'- uGCUGUccgccucgGCGAGGuGCUCGAaGUCcAGCa -3'
miRNA:   3'- -CGACG--------CGCUCCuCGGGUUcUAGcUCG- -5'
25645 5' -56.4 NC_005337.1 + 97779 0.66 0.85188
Target:  5'- cGCUGCGCGAgaaGGAccgcuucgugugguGUCCAcGGuguucuucUCGGGCa -3'
miRNA:   3'- -CGACGCGCU---CCU--------------CGGGUuCU--------AGCUCG- -5'
25645 5' -56.4 NC_005337.1 + 39940 0.66 0.869511
Target:  5'- -gUGCGCGGcGGGCgCCucGcgCGGGCg -3'
miRNA:   3'- cgACGCGCUcCUCG-GGuuCuaGCUCG- -5'
25645 5' -56.4 NC_005337.1 + 60905 0.66 0.861981
Target:  5'- -gUGUGCGGGcacGGCCac-GGUCGGGCa -3'
miRNA:   3'- cgACGCGCUCc--UCGGguuCUAGCUCG- -5'
25645 5' -56.4 NC_005337.1 + 14925 0.66 0.869511
Target:  5'- uGCUGcCGCuGGGGAGCCaggccuugcgCAGGAuggccUCGcGCa -3'
miRNA:   3'- -CGAC-GCG-CUCCUCGG----------GUUCU-----AGCuCG- -5'
25645 5' -56.4 NC_005337.1 + 828 0.66 0.869511
Target:  5'- --cGCGCGcGcGGGCCCGGGcUCGAcgaagGCg -3'
miRNA:   3'- cgaCGCGCuC-CUCGGGUUCuAGCU-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.