miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 3' -52.8 NC_005337.1 + 96813 0.66 0.979772
Target:  5'- aGGACAAGAUCgagcgCGcGGagACGcGGUa -3'
miRNA:   3'- -CCUGUUCUAGaa---GCuCCagUGC-CCGc -5'
25647 3' -52.8 NC_005337.1 + 133517 0.66 0.977446
Target:  5'- -cACAuGGcCgccgUCGAGGcCGCGGGCGc -3'
miRNA:   3'- ccUGUuCUaGa---AGCUCCaGUGCCCGC- -5'
25647 3' -52.8 NC_005337.1 + 133517 0.66 0.977446
Target:  5'- -cACAuGGcCgccgUCGAGGcCGCGGGCGc -3'
miRNA:   3'- ccUGUuCUaGa---AGCUCCaGUGCCCGC- -5'
25647 3' -52.8 NC_005337.1 + 40025 0.66 0.972214
Target:  5'- cGGugGAGAUgCUagCGGGcgucGUCGCGGuGCGc -3'
miRNA:   3'- -CCugUUCUA-GAa-GCUC----CAGUGCC-CGC- -5'
25647 3' -52.8 NC_005337.1 + 56614 0.66 0.969292
Target:  5'- cGGACAucGUCUgCGAGaccucgcgCACGGGCa -3'
miRNA:   3'- -CCUGUucUAGAaGCUCca------GUGCCCGc -5'
25647 3' -52.8 NC_005337.1 + 74027 0.66 0.969292
Target:  5'- aGGACGAGAccaacgUCUUCGuGGaCuGCGGGg- -3'
miRNA:   3'- -CCUGUUCU------AGAAGCuCCaG-UGCCCgc -5'
25647 3' -52.8 NC_005337.1 + 39060 0.67 0.966159
Target:  5'- uGGACGAGAUCcaCGAGcacgaccagAUGGGCGa -3'
miRNA:   3'- -CCUGUUCUAGaaGCUCcag------UGCCCGC- -5'
25647 3' -52.8 NC_005337.1 + 32639 0.67 0.966159
Target:  5'- cGGcguACGGGAUCUUgGAcaGGUCGCagaggGGGCu -3'
miRNA:   3'- -CC---UGUUCUAGAAgCU--CCAGUG-----CCCGc -5'
25647 3' -52.8 NC_005337.1 + 128773 0.67 0.966159
Target:  5'- aGGcGCAGGcggaUUCG-GGUcCACGGGCGu -3'
miRNA:   3'- -CC-UGUUCuag-AAGCuCCA-GUGCCCGC- -5'
25647 3' -52.8 NC_005337.1 + 31637 0.67 0.966159
Target:  5'- cGGGCgAAGAUCcggagcUUGAGcGaCACGGGCa -3'
miRNA:   3'- -CCUG-UUCUAGa-----AGCUC-CaGUGCCCGc -5'
25647 3' -52.8 NC_005337.1 + 42514 0.67 0.962806
Target:  5'- cGGACGuccagCUUCGAGGcgCACGcGCGc -3'
miRNA:   3'- -CCUGUucua-GAAGCUCCa-GUGCcCGC- -5'
25647 3' -52.8 NC_005337.1 + 95089 0.67 0.960686
Target:  5'- aGGCGGGAUCgUCGAGGaacuccucgaggcgcUCGCGGuCGu -3'
miRNA:   3'- cCUGUUCUAGaAGCUCC---------------AGUGCCcGC- -5'
25647 3' -52.8 NC_005337.1 + 16997 0.67 0.959228
Target:  5'- -cGCGGGAccccgccgacUCgUCGGGGUCuGCGGGCc -3'
miRNA:   3'- ccUGUUCU----------AGaAGCUCCAG-UGCCCGc -5'
25647 3' -52.8 NC_005337.1 + 25342 0.67 0.959228
Target:  5'- cGACGAGGUCUUCGAcG-CGCGgaagaaguGGCGc -3'
miRNA:   3'- cCUGUUCUAGAAGCUcCaGUGC--------CCGC- -5'
25647 3' -52.8 NC_005337.1 + 128663 0.67 0.95138
Target:  5'- cGGccACAAcGAUU-UCGAGGUaaagACGGGCGa -3'
miRNA:   3'- -CC--UGUU-CUAGaAGCUCCAg---UGCCCGC- -5'
25647 3' -52.8 NC_005337.1 + 93053 0.67 0.9471
Target:  5'- uGGGCu---UCgcCGAGGUcCGCGGGCu -3'
miRNA:   3'- -CCUGuucuAGaaGCUCCA-GUGCCCGc -5'
25647 3' -52.8 NC_005337.1 + 101267 0.68 0.942579
Target:  5'- cGGACGcgaAGAUCgcggccaUCGAGGaCAUGcGGCa -3'
miRNA:   3'- -CCUGU---UCUAGa------AGCUCCaGUGC-CCGc -5'
25647 3' -52.8 NC_005337.1 + 95579 0.68 0.932803
Target:  5'- cGGACGGGcaGUC--CGGGGUCGgcCGGGUGc -3'
miRNA:   3'- -CCUGUUC--UAGaaGCUCCAGU--GCCCGC- -5'
25647 3' -52.8 NC_005337.1 + 36023 0.68 0.932803
Target:  5'- gGGACGuAGAgcg-CGAGGUCcgacgaGGGCGa -3'
miRNA:   3'- -CCUGU-UCUagaaGCUCCAGug----CCCGC- -5'
25647 3' -52.8 NC_005337.1 + 128202 0.68 0.932803
Target:  5'- aGGACucGAUCcuggcgccgcUCGuGGcCGCGGGCGc -3'
miRNA:   3'- -CCUGuuCUAGa---------AGCuCCaGUGCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.