miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25661 5' -58.1 NC_005337.1 + 115962 0.66 0.834164
Target:  5'- gGCCauGGACGCgCuguUCCgcugccuguucgugcACAUCGCGCUg -3'
miRNA:   3'- -UGGcuCCUGCG-Gu--AGG---------------UGUAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 122361 0.66 0.834164
Target:  5'- uGCCGcaucGGACGCCAcgCGCAugugcgugcgcgaggUCGUGCUg -3'
miRNA:   3'- -UGGCu---CCUGCGGUagGUGU---------------AGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 92137 0.66 0.830876
Target:  5'- gACCccGGACGCg--CCGCGggccaGCGCCg -3'
miRNA:   3'- -UGGcuCCUGCGguaGGUGUag---CGCGG- -5'
25661 5' -58.1 NC_005337.1 + 117073 0.66 0.830876
Target:  5'- uUCGcaaGACGCCAUguggCUACcgCGCGCCc -3'
miRNA:   3'- uGGCuc-CUGCGGUA----GGUGuaGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 91891 0.66 0.830876
Target:  5'- cGCCGcGG-CGCC-UCCGgGUCGCcgGUCa -3'
miRNA:   3'- -UGGCuCCuGCGGuAGGUgUAGCG--CGG- -5'
25661 5' -58.1 NC_005337.1 + 64210 0.66 0.830876
Target:  5'- cGCaCGAGuuCGCgGUCCGCGacgggcaGCGCCu -3'
miRNA:   3'- -UG-GCUCcuGCGgUAGGUGUag-----CGCGG- -5'
25661 5' -58.1 NC_005337.1 + 68499 0.66 0.830876
Target:  5'- cACCGGGGGCGCgG---ACA--GCGCCg -3'
miRNA:   3'- -UGGCUCCUGCGgUaggUGUagCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 98031 0.66 0.830876
Target:  5'- cACCGAcGGGCugggguUCGUCCGgGagCGCGCCg -3'
miRNA:   3'- -UGGCU-CCUGc-----GGUAGGUgUa-GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 19221 0.66 0.830876
Target:  5'- uCCGu-GACGgCGUCCACGUC-CGCg -3'
miRNA:   3'- uGGCucCUGCgGUAGGUGUAGcGCGg -5'
25661 5' -58.1 NC_005337.1 + 68121 0.66 0.830876
Target:  5'- cUCGGGGucgcgGgGCCGguggCCGCG-CGCGCCc -3'
miRNA:   3'- uGGCUCC-----UgCGGUa---GGUGUaGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 67927 0.66 0.830876
Target:  5'- uGCCGcGGugGUCGcgcUCCACGagcaCGUGUCg -3'
miRNA:   3'- -UGGCuCCugCGGU---AGGUGUa---GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 114431 0.66 0.830876
Target:  5'- cACgGAGGACGaCGUCCGgcuCAUCGaggaGCg -3'
miRNA:   3'- -UGgCUCCUGCgGUAGGU---GUAGCg---CGg -5'
25661 5' -58.1 NC_005337.1 + 57860 0.66 0.830876
Target:  5'- cGCUGAccaaggaggacGGGCGCCAcgCC-CcgCGCGCa -3'
miRNA:   3'- -UGGCU-----------CCUGCGGUa-GGuGuaGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 107055 0.66 0.830876
Target:  5'- -aCGAGGAC-CUggCgGCGgcggCGCGCCa -3'
miRNA:   3'- ugGCUCCUGcGGuaGgUGUa---GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 58352 0.66 0.830876
Target:  5'- gACCGuGGccGCGCUcUUCGCGgacuUCGCGCg -3'
miRNA:   3'- -UGGCuCC--UGCGGuAGGUGU----AGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 6984 0.66 0.82589
Target:  5'- -gCGGGuGACGCCGUgCuuguccauggcgcggACGUCcGCGCCc -3'
miRNA:   3'- ugGCUC-CUGCGGUAgG---------------UGUAG-CGCGG- -5'
25661 5' -58.1 NC_005337.1 + 33975 0.66 0.822532
Target:  5'- cGCgGGGGACGCag-CC-CAggaugCGCGUCu -3'
miRNA:   3'- -UGgCUCCUGCGguaGGuGUa----GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 81264 0.66 0.822532
Target:  5'- aGCCGcAGGuucAUGCCGccgCUACAggagcaCGCGCCu -3'
miRNA:   3'- -UGGC-UCC---UGCGGUa--GGUGUa-----GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 120943 0.66 0.822532
Target:  5'- aGCgGGGGugGCUgauggcgaGCAUCGaCGCCa -3'
miRNA:   3'- -UGgCUCCugCGGuagg----UGUAGC-GCGG- -5'
25661 5' -58.1 NC_005337.1 + 92769 0.66 0.822532
Target:  5'- gGCCGcgcGGAUGCgcUCCAUcgCGgGCCc -3'
miRNA:   3'- -UGGCu--CCUGCGguAGGUGuaGCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.