miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25661 5' -58.1 NC_005337.1 + 596 0.68 0.691785
Target:  5'- cGCCGGcGaACGCCAcgcaggcgaacUCCGCGUCgGCGUCc -3'
miRNA:   3'- -UGGCUcC-UGCGGU-----------AGGUGUAG-CGCGG- -5'
25661 5' -58.1 NC_005337.1 + 596 0.68 0.691785
Target:  5'- cGCCGGcGaACGCCAcgcaggcgaacUCCGCGUCgGCGUCc -3'
miRNA:   3'- -UGGCUcC-UGCGGU-----------AGGUGUAG-CGCGG- -5'
25661 5' -58.1 NC_005337.1 + 814 0.73 0.437968
Target:  5'- uCCGcGGA-GCCGUCCGCG-CGCGCg -3'
miRNA:   3'- uGGCuCCUgCGGUAGGUGUaGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 814 0.73 0.437968
Target:  5'- uCCGcGGA-GCCGUCCGCG-CGCGCg -3'
miRNA:   3'- uGGCuCCUgCGGUAGGUGUaGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 1330 0.66 0.800069
Target:  5'- uGCaCGAGGcCGCgGcggcgguaguugaacUCCGCGcUCGCGUCa -3'
miRNA:   3'- -UG-GCUCCuGCGgU---------------AGGUGU-AGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 1449 0.71 0.531566
Target:  5'- cGCCGAGGuGCGCgA-CCACGUa-CGCCa -3'
miRNA:   3'- -UGGCUCC-UGCGgUaGGUGUAgcGCGG- -5'
25661 5' -58.1 NC_005337.1 + 1713 0.71 0.551206
Target:  5'- -gCGAGG-CGCCGUaCCGCAcguucagCGCGUCg -3'
miRNA:   3'- ugGCUCCuGCGGUA-GGUGUa------GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 2371 0.69 0.66171
Target:  5'- cACCGGucGAC-CgCGUCCACGUgCGCGCCc -3'
miRNA:   3'- -UGGCUc-CUGcG-GUAGGUGUA-GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 2832 0.71 0.548245
Target:  5'- gGCCGAGcGCgGCCuccgcggagacggaGUCCGCGgagccgCGCGCCa -3'
miRNA:   3'- -UGGCUCcUG-CGG--------------UAGGUGUa-----GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 3648 0.67 0.754188
Target:  5'- cGCCGcGGccuCGUCGUCCgcGCAgucgggggucuugcgUCGCGCCc -3'
miRNA:   3'- -UGGCuCCu--GCGGUAGG--UGU---------------AGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 3892 0.69 0.66171
Target:  5'- cUUGAGGACGCgCAggUCCACGaCG-GCCa -3'
miRNA:   3'- uGGCUCCUGCG-GU--AGGUGUaGCgCGG- -5'
25661 5' -58.1 NC_005337.1 + 5929 0.67 0.778443
Target:  5'- aGCgGGGaGACGCCGgcguuggaCCGagcaGUCGCGCUc -3'
miRNA:   3'- -UGgCUC-CUGCGGUa-------GGUg---UAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 6072 0.67 0.739862
Target:  5'- -aCGAGcGGCGCCAggaucgagUCCuugcacgagguguACGUCGCgGCCa -3'
miRNA:   3'- ugGCUC-CUGCGGU--------AGG-------------UGUAGCG-CGG- -5'
25661 5' -58.1 NC_005337.1 + 6786 0.71 0.541356
Target:  5'- cGCCGGugucGAUGCCcgCCGgAUCGCaGCCg -3'
miRNA:   3'- -UGGCUc---CUGCGGuaGGUgUAGCG-CGG- -5'
25661 5' -58.1 NC_005337.1 + 6865 0.71 0.535474
Target:  5'- cGCC-AGGugGugcagcagcgugcgcCCGUCCAUGUCGCGCg -3'
miRNA:   3'- -UGGcUCCugC---------------GGUAGGUGUAGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 6984 0.66 0.82589
Target:  5'- -gCGGGuGACGCCGUgCuuguccauggcgcggACGUCcGCGCCc -3'
miRNA:   3'- ugGCUC-CUGCGGUAgG---------------UGUAG-CGCGG- -5'
25661 5' -58.1 NC_005337.1 + 7474 0.69 0.66171
Target:  5'- -aCGAGGGCGCgCAcgacguccaggUCCACGggGCuGCCg -3'
miRNA:   3'- ugGCUCCUGCG-GU-----------AGGUGUagCG-CGG- -5'
25661 5' -58.1 NC_005337.1 + 8048 0.69 0.64153
Target:  5'- uGCgGAGGGCcagcuCCAUCaCGCAcUCGCGCg -3'
miRNA:   3'- -UGgCUCCUGc----GGUAG-GUGU-AGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 8136 0.71 0.512184
Target:  5'- gUCGGGGACGCCGggCAUGgccgCGCGCa -3'
miRNA:   3'- uGGCUCCUGCGGUagGUGUa---GCGCGg -5'
25661 5' -58.1 NC_005337.1 + 10247 0.66 0.81402
Target:  5'- cUUGcAGGugGCCAgCCACAUCaGCaGCUc -3'
miRNA:   3'- uGGC-UCCugCGGUaGGUGUAG-CG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.