miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25662 5' -53.1 NC_005337.1 + 93096 0.77 0.471632
Target:  5'- gGAGC-UCAUCgaCGUGGAGAUCGgGg -3'
miRNA:   3'- gCUCGaAGUAGaaGCACCUCUGGCgC- -5'
25662 5' -53.1 NC_005337.1 + 45011 0.66 0.972857
Target:  5'- --cGCggcCAUCUaCGUGGGGAgCGUGg -3'
miRNA:   3'- gcuCGaa-GUAGAaGCACCUCUgGCGC- -5'
25662 5' -53.1 NC_005337.1 + 2695 0.66 0.972857
Target:  5'- gGAGCUg---CggCGUGGGGAC-GCGg -3'
miRNA:   3'- gCUCGAaguaGaaGCACCUCUGgCGC- -5'
25662 5' -53.1 NC_005337.1 + 53786 0.67 0.952243
Target:  5'- gCGGcGCaacaugUUCAcCggCGUGGAGAUCGCGg -3'
miRNA:   3'- -GCU-CG------AAGUaGaaGCACCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 42552 0.67 0.947998
Target:  5'- gCGGGCgcuggugCggCUgCGgcUGGAGGCCGCGg -3'
miRNA:   3'- -GCUCGaa-----GuaGAaGC--ACCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 131434 0.67 0.94351
Target:  5'- gCGGaCUcCGUCUcCGcGGAGGCCGCGc -3'
miRNA:   3'- -GCUcGAaGUAGAaGCaCCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 30567 0.67 0.94351
Target:  5'- gGAGCUcCc----CGUGGAGGCCGUGc -3'
miRNA:   3'- gCUCGAaGuagaaGCACCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 29515 0.67 0.933797
Target:  5'- gGAGCUUCuccagcacggcgGUCUUCGcgcGGcGGCCGUGc -3'
miRNA:   3'- gCUCGAAG------------UAGAAGCa--CCuCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 1985 0.67 0.933797
Target:  5'- aCGAGCUcCAgCUcgCGUcGGAcGACCGCa -3'
miRNA:   3'- -GCUCGAaGUaGAa-GCA-CCU-CUGGCGc -5'
25662 5' -53.1 NC_005337.1 + 74030 0.68 0.917364
Target:  5'- aCGAGaccaaCGUCUUCGUGGA--CUGCGg -3'
miRNA:   3'- -GCUCgaa--GUAGAAGCACCUcuGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 20620 0.75 0.602608
Target:  5'- --cGCUUCAUCgUCGccGGAGGCCGUGu -3'
miRNA:   3'- gcuCGAAGUAGaAGCa-CCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 19806 0.73 0.706504
Target:  5'- aCGAGCacgUCGUCgacgUCGUcGGGGaACCGCu -3'
miRNA:   3'- -GCUCGa--AGUAGa---AGCA-CCUC-UGGCGc -5'
25662 5' -53.1 NC_005337.1 + 30431 0.7 0.838681
Target:  5'- aCGGGggUCAUCUUCuUGGGGACgGUc -3'
miRNA:   3'- -GCUCgaAGUAGAAGcACCUCUGgCGc -5'
25662 5' -53.1 NC_005337.1 + 110579 0.69 0.885051
Target:  5'- gCGAGCcgCGUCUUCauGUGcGAGaACUGCGc -3'
miRNA:   3'- -GCUCGaaGUAGAAG--CAC-CUC-UGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 75423 0.68 0.905168
Target:  5'- gCGGGCgUCAUC-UCGUGGcuguuGAgCCGCa -3'
miRNA:   3'- -GCUCGaAGUAGaAGCACCu----CU-GGCGc -5'
25662 5' -53.1 NC_005337.1 + 24318 0.68 0.905168
Target:  5'- gCGGGaCaUCGUCgaCGgcagcacGGAGACCGCGg -3'
miRNA:   3'- -GCUC-GaAGUAGaaGCa------CCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 110247 0.66 0.969973
Target:  5'- cCGGGCgUgAUCUUCGUGGuuacGGACaUGCc -3'
miRNA:   3'- -GCUCGaAgUAGAAGCACC----UCUG-GCGc -5'
25662 5' -53.1 NC_005337.1 + 114889 0.73 0.716687
Target:  5'- -cGGCccCAUCUUCGUGGAaGCCGCc -3'
miRNA:   3'- gcUCGaaGUAGAAGCACCUcUGGCGc -5'
25662 5' -53.1 NC_005337.1 + 66760 0.71 0.802863
Target:  5'- uGAGC-UCGaagaaguUCUUgGUGGAgGGCCGCGu -3'
miRNA:   3'- gCUCGaAGU-------AGAAgCACCU-CUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 72222 0.71 0.803772
Target:  5'- cCGGGCaUCGUCga-GUGGGGGCgCGCc -3'
miRNA:   3'- -GCUCGaAGUAGaagCACCUCUG-GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.