miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25716 3' -51.7 NC_005337.1 + 881 0.66 0.985067
Target:  5'- --gGCgGAAGAGCGCGccgagcAGGAGCccgagCGCGa -3'
miRNA:   3'- agaUG-CUUCUUGUGC------UCCUCGa----GCGU- -5'
25716 3' -51.7 NC_005337.1 + 133764 0.66 0.985067
Target:  5'- cCUGCGc----CGCGAGGAGCUCu-- -3'
miRNA:   3'- aGAUGCuucuuGUGCUCCUCGAGcgu -5'
25716 3' -51.7 NC_005337.1 + 133764 0.66 0.985067
Target:  5'- cCUGCGc----CGCGAGGAGCUCu-- -3'
miRNA:   3'- aGAUGCuucuuGUGCUCCUCGAGcgu -5'
25716 3' -51.7 NC_005337.1 + 129603 0.66 0.985067
Target:  5'- --cGCGAGcGAC-CGuGGAGCUCGUc -3'
miRNA:   3'- agaUGCUUcUUGuGCuCCUCGAGCGu -5'
25716 3' -51.7 NC_005337.1 + 115356 0.66 0.985067
Target:  5'- aUCUGCGugcccgcGGACGuggUGGGGAGCaCGCAc -3'
miRNA:   3'- -AGAUGCuu-----CUUGU---GCUCCUCGaGCGU- -5'
25716 3' -51.7 NC_005337.1 + 881 0.66 0.985067
Target:  5'- --gGCgGAAGAGCGCGccgagcAGGAGCccgagCGCGa -3'
miRNA:   3'- agaUG-CUUCUUGUGC------UCCUCGa----GCGU- -5'
25716 3' -51.7 NC_005337.1 + 21995 0.66 0.985067
Target:  5'- uUCgcggACGggGAGCccaucCGGgacauGGAGCUCGUg -3'
miRNA:   3'- -AGa---UGCuuCUUGu----GCU-----CCUCGAGCGu -5'
25716 3' -51.7 NC_005337.1 + 50107 0.66 0.983168
Target:  5'- gCUGau-GGAACACG-GGcGCUCGCu -3'
miRNA:   3'- aGAUgcuUCUUGUGCuCCuCGAGCGu -5'
25716 3' -51.7 NC_005337.1 + 10319 0.66 0.981091
Target:  5'- gUCUAUGugcAGCGCGAccGGCUCGCGg -3'
miRNA:   3'- -AGAUGCuucUUGUGCUccUCGAGCGU- -5'
25716 3' -51.7 NC_005337.1 + 112373 0.66 0.981091
Target:  5'- cUCcAUGAAGcGCGCguccugGAGGAGCgccgCGCAg -3'
miRNA:   3'- -AGaUGCUUCuUGUG------CUCCUCGa---GCGU- -5'
25716 3' -51.7 NC_005337.1 + 127961 0.66 0.981091
Target:  5'- --gGCGGAGAuccgcgccauGCGCGAGGuGCgcuGCAa -3'
miRNA:   3'- agaUGCUUCU----------UGUGCUCCuCGag-CGU- -5'
25716 3' -51.7 NC_005337.1 + 54118 0.66 0.978829
Target:  5'- gCUACGuGGAGCGCGAcGGccGCgccgCGCGc -3'
miRNA:   3'- aGAUGCuUCUUGUGCU-CCu-CGa---GCGU- -5'
25716 3' -51.7 NC_005337.1 + 42260 0.66 0.978829
Target:  5'- gUUUGUGggGAGCACGuuGAGCgCGUAc -3'
miRNA:   3'- -AGAUGCuuCUUGUGCucCUCGaGCGU- -5'
25716 3' -51.7 NC_005337.1 + 74883 0.66 0.978592
Target:  5'- cCUGCGcccgaccGAGGACGCcGGGGGCgugauggCGCGg -3'
miRNA:   3'- aGAUGC-------UUCUUGUGcUCCUCGa------GCGU- -5'
25716 3' -51.7 NC_005337.1 + 30361 0.66 0.976372
Target:  5'- --cGCGGacaGGAGCACGcGGAGCacguccaugUCGCGc -3'
miRNA:   3'- agaUGCU---UCUUGUGCuCCUCG---------AGCGU- -5'
25716 3' -51.7 NC_005337.1 + 15847 0.67 0.973712
Target:  5'- --cACGgcGAGCGCGGGcuuggcGGCUCGCc -3'
miRNA:   3'- agaUGCuuCUUGUGCUCc-----UCGAGCGu -5'
25716 3' -51.7 NC_005337.1 + 48535 0.67 0.973712
Target:  5'- gCUcCGAGGAGgaGCGgcGGGAGUUCGUAg -3'
miRNA:   3'- aGAuGCUUCUUg-UGC--UCCUCGAGCGU- -5'
25716 3' -51.7 NC_005337.1 + 65407 0.67 0.970841
Target:  5'- --cGCGAAGAuguucuccgGCGCGGGGcugguGGCgUCGCGg -3'
miRNA:   3'- agaUGCUUCU---------UGUGCUCC-----UCG-AGCGU- -5'
25716 3' -51.7 NC_005337.1 + 45220 0.67 0.970841
Target:  5'- gUCUcGCGgcGGACGCGGccuucGAGCUCGUc -3'
miRNA:   3'- -AGA-UGCuuCUUGUGCUc----CUCGAGCGu -5'
25716 3' -51.7 NC_005337.1 + 104184 0.67 0.970841
Target:  5'- cUCUGCGA---GCugGAGGAcGCcUGCAc -3'
miRNA:   3'- -AGAUGCUucuUGugCUCCU-CGaGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.