miRNA display CGI


Results 1 - 20 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25716 5' -59.9 NC_005337.1 + 582 0.68 0.615143
Target:  5'- gGCCGCGCggaaGCCGCCGgcgaacgccacgcaGGCgaacUCCGCGucGGc -3'
miRNA:   3'- -CGGCGUG----UGGUGGC--------------UCG----AGGCGCu-CC- -5'
25716 5' -59.9 NC_005337.1 + 582 0.68 0.615143
Target:  5'- gGCCGCGCggaaGCCGCCGgcgaacgccacgcaGGCgaacUCCGCGucGGc -3'
miRNA:   3'- -CGGCGUG----UGGUGGC--------------UCG----AGGCGCu-CC- -5'
25716 5' -59.9 NC_005337.1 + 707 0.72 0.420747
Target:  5'- aGCuCGCGCGCaCGCCc-GCggCCGCGGGGu -3'
miRNA:   3'- -CG-GCGUGUG-GUGGcuCGa-GGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 707 0.72 0.420747
Target:  5'- aGCuCGCGCGCaCGCCc-GCggCCGCGGGGu -3'
miRNA:   3'- -CG-GCGUGUG-GUGGcuCGa-GGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 781 0.83 0.086441
Target:  5'- uGCUGCGCGCCGCCGAcgacgaggcagaccaGCUCCGCGGa- -3'
miRNA:   3'- -CGGCGUGUGGUGGCU---------------CGAGGCGCUcc -5'
25716 5' -59.9 NC_005337.1 + 781 0.83 0.086441
Target:  5'- uGCUGCGCGCCGCCGAcgacgaggcagaccaGCUCCGCGGa- -3'
miRNA:   3'- -CGGCGUGUGGUGGCU---------------CGAGGCGCUcc -5'
25716 5' -59.9 NC_005337.1 + 1133 0.85 0.064293
Target:  5'- aGCaCGCGCGCgACC-AGCUCCGCGGGGa -3'
miRNA:   3'- -CG-GCGUGUGgUGGcUCGAGGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 1133 0.85 0.064293
Target:  5'- aGCaCGCGCGCgACC-AGCUCCGCGGGGa -3'
miRNA:   3'- -CG-GCGUGUGgUGGcUCGAGGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 1243 0.68 0.608201
Target:  5'- cCCGUACACgacgaGCCGGGCgaucagCCGC-AGGa -3'
miRNA:   3'- cGGCGUGUGg----UGGCUCGa-----GGCGcUCC- -5'
25716 5' -59.9 NC_005337.1 + 2168 0.7 0.501535
Target:  5'- uGCCGCGCACggCGCCGAcGCgcaCgGCGcAGGc -3'
miRNA:   3'- -CGGCGUGUG--GUGGCU-CGa--GgCGC-UCC- -5'
25716 5' -59.9 NC_005337.1 + 2221 0.68 0.647913
Target:  5'- gGCCGaUGCACCACCGcg--CCGUaGAGGa -3'
miRNA:   3'- -CGGC-GUGUGGUGGCucgaGGCG-CUCC- -5'
25716 5' -59.9 NC_005337.1 + 2868 0.71 0.445945
Target:  5'- aGCCGCGCGCCAgCGggaacacgaucacGGCcCCGCGGu- -3'
miRNA:   3'- -CGGCGUGUGGUgGC-------------UCGaGGCGCUcc -5'
25716 5' -59.9 NC_005337.1 + 3082 0.66 0.763864
Target:  5'- uCCGCGCACCucggcgacgGCC-AGCgacUCCGCGAc- -3'
miRNA:   3'- cGGCGUGUGG---------UGGcUCG---AGGCGCUcc -5'
25716 5' -59.9 NC_005337.1 + 4080 0.68 0.598297
Target:  5'- cUCGCACuCCAggaUGAGCUCCGCGuGc -3'
miRNA:   3'- cGGCGUGuGGUg--GCUCGAGGCGCuCc -5'
25716 5' -59.9 NC_005337.1 + 5521 0.66 0.754607
Target:  5'- uUCGCGCGCCgGCgGAGCUCUGUc--- -3'
miRNA:   3'- cGGCGUGUGG-UGgCUCGAGGCGcucc -5'
25716 5' -59.9 NC_005337.1 + 5581 0.71 0.446829
Target:  5'- aGCCGCGuCGCCAgCGcGCgugCCcgGCGGGGg -3'
miRNA:   3'- -CGGCGU-GUGGUgGCuCGa--GG--CGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 5773 0.68 0.608201
Target:  5'- aGCCGCGCgACCACguacgCGAcGCacgcCCGCGAGc -3'
miRNA:   3'- -CGGCGUG-UGGUG-----GCU-CGa---GGCGCUCc -5'
25716 5' -59.9 NC_005337.1 + 6166 0.7 0.482952
Target:  5'- aGCCGCGCACCACC-AGUucgcuuagcacUCCGgGucucGGg -3'
miRNA:   3'- -CGGCGUGUGGUGGcUCG-----------AGGCgCu---CC- -5'
25716 5' -59.9 NC_005337.1 + 6402 0.69 0.558007
Target:  5'- cGCCGCGCGCCACCaGAcugugcacgcacaGCagCGCGGc- -3'
miRNA:   3'- -CGGCGUGUGGUGG-CU-------------CGagGCGCUcc -5'
25716 5' -59.9 NC_005337.1 + 6629 0.68 0.628051
Target:  5'- cGCCgGCACGCCGCaGGGUUgaagaccgCCGCGcGGu -3'
miRNA:   3'- -CGG-CGUGUGGUGgCUCGA--------GGCGCuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.