miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25733 3' -55.1 NC_005337.1 + 4936 1.12 0.001916
Target:  5'- aGCACGCUGGAGAGGAACCGUUCCGACa -3'
miRNA:   3'- -CGUGCGACCUCUCCUUGGCAAGGCUG- -5'
25733 3' -55.1 NC_005337.1 + 122664 0.77 0.351182
Target:  5'- cGCACGCUGGAcGAGGAccuggugcugcACCGcaUCGACu -3'
miRNA:   3'- -CGUGCGACCU-CUCCU-----------UGGCaaGGCUG- -5'
25733 3' -55.1 NC_005337.1 + 18079 0.76 0.392132
Target:  5'- aCGCGCUGGcAGAGGAGCguggUGUUCCG-Ca -3'
miRNA:   3'- cGUGCGACC-UCUCCUUG----GCAAGGCuG- -5'
25733 3' -55.1 NC_005337.1 + 95350 0.75 0.482708
Target:  5'- -gGCGCUGcGAcaccGGGGAGCCGUcgaugCCGACg -3'
miRNA:   3'- cgUGCGAC-CU----CUCCUUGGCAa----GGCUG- -5'
25733 3' -55.1 NC_005337.1 + 124799 0.73 0.565889
Target:  5'- cCGCGCUGGAGuGGGGCCGcagcgaggaggugcUCCGcACg -3'
miRNA:   3'- cGUGCGACCUCuCCUUGGCa-------------AGGC-UG- -5'
25733 3' -55.1 NC_005337.1 + 89877 0.73 0.582217
Target:  5'- cGCGCGCUGGcGAuGGAgagcgcGCUGUUCaCGAUg -3'
miRNA:   3'- -CGUGCGACCuCU-CCU------UGGCAAG-GCUG- -5'
25733 3' -55.1 NC_005337.1 + 45952 0.73 0.596582
Target:  5'- aGCGCGCcGGAGcgcacgggcauuuccAGGAGCCGcUCCGcCu -3'
miRNA:   3'- -CGUGCGaCCUC---------------UCCUUGGCaAGGCuG- -5'
25733 3' -55.1 NC_005337.1 + 11099 0.71 0.664651
Target:  5'- cGCA-GCUGGAGAGGuACCGggugauuggccUUCCGuGCu -3'
miRNA:   3'- -CGUgCGACCUCUCCuUGGC-----------AAGGC-UG- -5'
25733 3' -55.1 NC_005337.1 + 117263 0.71 0.664651
Target:  5'- uGCGCGCUGGAcgucGAGGccCCGc-CCGAUa -3'
miRNA:   3'- -CGUGCGACCU----CUCCuuGGCaaGGCUG- -5'
25733 3' -55.1 NC_005337.1 + 131410 0.71 0.685159
Target:  5'- cCACGCUGGuGAGGcGCCGa-UCGGCc -3'
miRNA:   3'- cGUGCGACCuCUCCuUGGCaaGGCUG- -5'
25733 3' -55.1 NC_005337.1 + 96476 0.71 0.705488
Target:  5'- -gACGCUGGAGuGGA-CCGUgCCG-Cu -3'
miRNA:   3'- cgUGCGACCUCuCCUuGGCAaGGCuG- -5'
25733 3' -55.1 NC_005337.1 + 36319 0.7 0.742375
Target:  5'- cGCACGgaGGAGgucGGGAACaCGUagagcguccgcgcgUCCGAg -3'
miRNA:   3'- -CGUGCgaCCUC---UCCUUG-GCA--------------AGGCUg -5'
25733 3' -55.1 NC_005337.1 + 48388 0.7 0.755041
Target:  5'- cCAUGCUGGAG-GGcuCCGUgugcCCGAUc -3'
miRNA:   3'- cGUGCGACCUCuCCuuGGCAa---GGCUG- -5'
25733 3' -55.1 NC_005337.1 + 48992 0.7 0.764658
Target:  5'- aGCAUGCUGGuGuuccagaaccGGGAGCUGcgUCCGGu -3'
miRNA:   3'- -CGUGCGACCuC----------UCCUUGGCa-AGGCUg -5'
25733 3' -55.1 NC_005337.1 + 121545 0.69 0.772266
Target:  5'- uGCACGCUGGGGcuGGAGgCGUacgucgccuucgCCGAg -3'
miRNA:   3'- -CGUGCGACCUCu-CCUUgGCAa-----------GGCUg -5'
25733 3' -55.1 NC_005337.1 + 131148 0.69 0.774156
Target:  5'- cGCGCGCUGGAcgcGAGGccGGCCGcggUCgCGGu -3'
miRNA:   3'- -CGUGCGACCU---CUCC--UUGGCa--AG-GCUg -5'
25733 3' -55.1 NC_005337.1 + 59465 0.69 0.774156
Target:  5'- cCGCGCUGGAGAGGcGCagGUccCCGGu -3'
miRNA:   3'- cGUGCGACCUCUCCuUGg-CAa-GGCUg -5'
25733 3' -55.1 NC_005337.1 + 107259 0.69 0.783523
Target:  5'- uGCugGCcGGGGAGcacauCCGcUUCCGGCu -3'
miRNA:   3'- -CGugCGaCCUCUCcuu--GGC-AAGGCUG- -5'
25733 3' -55.1 NC_005337.1 + 89551 0.69 0.792753
Target:  5'- cGCuCGUUGGAGAGGucCCGg-CCGcACg -3'
miRNA:   3'- -CGuGCGACCUCUCCuuGGCaaGGC-UG- -5'
25733 3' -55.1 NC_005337.1 + 67546 0.69 0.792753
Target:  5'- aCGCGCUGGAGGagauGGACCGcaCgGACg -3'
miRNA:   3'- cGUGCGACCUCUc---CUUGGCaaGgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.