miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25733 5' -64 NC_005337.1 + 95325 0.66 0.503367
Target:  5'- -cGCCGaucGGUGCGCGUCgCaguaGCGCCGGa -3'
miRNA:   3'- aaCGGCc--UCGCGCGCGG-Gg---UGUGGUC- -5'
25733 5' -64 NC_005337.1 + 133754 0.66 0.503367
Target:  5'- -aGCUGGAGCGCcuGCGCCgcgaggagcUCugAUCGGu -3'
miRNA:   3'- aaCGGCCUCGCG--CGCGG---------GGugUGGUC- -5'
25733 5' -64 NC_005337.1 + 65963 0.66 0.503367
Target:  5'- gUGCCGcccuccucGGGCaCGCGCgUCCACGCCGc -3'
miRNA:   3'- aACGGC--------CUCGcGCGCG-GGGUGUGGUc -5'
25733 5' -64 NC_005337.1 + 105779 0.66 0.503367
Target:  5'- gUGCCGcGcGcCGCGCGCCgCGCGgCCGc -3'
miRNA:   3'- aACGGC-CuC-GCGCGCGGgGUGU-GGUc -5'
25733 5' -64 NC_005337.1 + 55186 0.66 0.503367
Target:  5'- gUGCCGGugggcauGCGCGUGUUCCuGCACaCGa -3'
miRNA:   3'- aACGGCCu------CGCGCGCGGGG-UGUG-GUc -5'
25733 5' -64 NC_005337.1 + 23958 0.66 0.503367
Target:  5'- -gGCCGG-GCcgaacgGCGCGCCCuCACAgCu- -3'
miRNA:   3'- aaCGGCCuCG------CGCGCGGG-GUGUgGuc -5'
25733 5' -64 NC_005337.1 + 133754 0.66 0.503367
Target:  5'- -aGCUGGAGCGCcuGCGCCgcgaggagcUCugAUCGGu -3'
miRNA:   3'- aaCGGCCUCGCG--CGCGG---------GGugUGGUC- -5'
25733 5' -64 NC_005337.1 + 114871 0.66 0.503367
Target:  5'- -aGCCGGuGCuGUGCGCCggACACguGa -3'
miRNA:   3'- aaCGGCCuCG-CGCGCGGggUGUGguC- -5'
25733 5' -64 NC_005337.1 + 44357 0.66 0.503367
Target:  5'- cUGUgaGGAGUgggGCGaCGCCCCGCcgcccACCGGg -3'
miRNA:   3'- aACGg-CCUCG---CGC-GCGGGGUG-----UGGUC- -5'
25733 5' -64 NC_005337.1 + 93606 0.66 0.502429
Target:  5'- -cGCCGucgccGCGCcuagaggGCGCCCCACugCGu -3'
miRNA:   3'- aaCGGCcu---CGCG-------CGCGGGGUGugGUc -5'
25733 5' -64 NC_005337.1 + 38337 0.66 0.494026
Target:  5'- -cGCCGG-GCGaguaCGCGCUgCGCAUCAc -3'
miRNA:   3'- aaCGGCCuCGC----GCGCGGgGUGUGGUc -5'
25733 5' -64 NC_005337.1 + 108837 0.66 0.494026
Target:  5'- gUGCCGaAGCGCGCggGCgaCACGCCGu -3'
miRNA:   3'- aACGGCcUCGCGCG--CGggGUGUGGUc -5'
25733 5' -64 NC_005337.1 + 16440 0.66 0.494026
Target:  5'- -cGCCuGcGUGCGCaCCCCGC-CCGGg -3'
miRNA:   3'- aaCGGcCuCGCGCGcGGGGUGuGGUC- -5'
25733 5' -64 NC_005337.1 + 54665 0.66 0.494026
Target:  5'- -cGCUGcGGGCuccugcgcucGCGCGaCCCCuACACCAc -3'
miRNA:   3'- aaCGGC-CUCG----------CGCGC-GGGG-UGUGGUc -5'
25733 5' -64 NC_005337.1 + 60759 0.66 0.494026
Target:  5'- gUGCCGccucGCGgGUGCCCaGCACCGc -3'
miRNA:   3'- aACGGCcu--CGCgCGCGGGgUGUGGUc -5'
25733 5' -64 NC_005337.1 + 121569 0.66 0.494026
Target:  5'- -aGCgCGGcGCGCGCGCggaCGcCACCGGg -3'
miRNA:   3'- aaCG-GCCuCGCGCGCGgg-GU-GUGGUC- -5'
25733 5' -64 NC_005337.1 + 21658 0.66 0.494026
Target:  5'- -cGCUGGGGCaCGUGCUCgCGCugCAc -3'
miRNA:   3'- aaCGGCCUCGcGCGCGGG-GUGugGUc -5'
25733 5' -64 NC_005337.1 + 48860 0.66 0.494026
Target:  5'- -cGUCauggacGAGUGCGCGuCCCCGCccggcgGCCAGa -3'
miRNA:   3'- aaCGGc-----CUCGCGCGC-GGGGUG------UGGUC- -5'
25733 5' -64 NC_005337.1 + 9360 0.66 0.484765
Target:  5'- -cGCCuGGA-CGCGCGCUgCGCguucgaGCCAGa -3'
miRNA:   3'- aaCGG-CCUcGCGCGCGGgGUG------UGGUC- -5'
25733 5' -64 NC_005337.1 + 9454 0.66 0.484765
Target:  5'- aUGCCcgugcGGAGCaccuccucgcuGCG-GCCCCACuCCAGc -3'
miRNA:   3'- aACGG-----CCUCG-----------CGCgCGGGGUGuGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.