miRNA display CGI


Results 1 - 20 of 581 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25792 3' -62.8 NC_005337.1 + 28245 1.08 0.00084
Target:  5'- aCGCCGUCGCGCGGCACCACGCGCACGu -3'
miRNA:   3'- -GCGGCAGCGCGCCGUGGUGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 70275 0.76 0.168112
Target:  5'- uGCCGgaaGcCGCGGCACaagCACGCGCACc -3'
miRNA:   3'- gCGGCag-C-GCGCCGUG---GUGCGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 104033 0.75 0.172222
Target:  5'- aCGCCaUCGCGCGGaacgucuCCuCGCGCACGc -3'
miRNA:   3'- -GCGGcAGCGCGCCgu-----GGuGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 76008 0.66 0.624791
Target:  5'- cCGCCGUgCGC-CGGUacacgcggaagACCGcCGCGC-CGg -3'
miRNA:   3'- -GCGGCA-GCGcGCCG-----------UGGU-GCGCGuGC- -5'
25792 3' -62.8 NC_005337.1 + 108971 0.79 0.10258
Target:  5'- gCGCCGgucgaCGCGCGGCccgcccGCCGUGCGCGCGa -3'
miRNA:   3'- -GCGGCa----GCGCGCCG------UGGUGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 21169 0.79 0.10258
Target:  5'- aCGCCGuucgUCGCGCGG-ACCuGCGCGCGCa -3'
miRNA:   3'- -GCGGC----AGCGCGCCgUGG-UGCGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 132101 0.79 0.10519
Target:  5'- gCGCCGUgCGCGuCGGCGCCGUGCGCGg- -3'
miRNA:   3'- -GCGGCA-GCGC-GCCGUGGUGCGCGUgc -5'
25792 3' -62.8 NC_005337.1 + 99375 0.78 0.113397
Target:  5'- aCGcCCGUggaCGCGCGGCACCACcugccggugcuGCGCACc -3'
miRNA:   3'- -GC-GGCA---GCGCGCCGUGGUG-----------CGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 42370 0.77 0.13966
Target:  5'- aCGCaCGUCGUGaccggcgacccggaGGCGCCGCGgCGCGCGg -3'
miRNA:   3'- -GCG-GCAGCGCg-------------CCGUGGUGC-GCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 41378 0.76 0.164091
Target:  5'- cCGCCGaCGC-CGGCaACCGCGCGCGgGc -3'
miRNA:   3'- -GCGGCaGCGcGCCG-UGGUGCGCGUgC- -5'
25792 3' -62.8 NC_005337.1 + 123124 0.76 0.148859
Target:  5'- aGCaCGUCGUGCGGCGCCcguCGCGgUGCGu -3'
miRNA:   3'- gCG-GCAGCGCGCCGUGGu--GCGC-GUGC- -5'
25792 3' -62.8 NC_005337.1 + 109166 0.77 0.138291
Target:  5'- gCGuCCG-CGCGCGccGCGCCGCGCGgGCGg -3'
miRNA:   3'- -GC-GGCaGCGCGC--CGUGGUGCGCgUGC- -5'
25792 3' -62.8 NC_005337.1 + 28504 0.82 0.06166
Target:  5'- gCGCgGUCGCGCGGCACUGCguggggcagGCGCACu -3'
miRNA:   3'- -GCGgCAGCGCGCCGUGGUG---------CGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 98881 0.76 0.152542
Target:  5'- gCGCCGcgCGCGCGG-ACUGCGCGCuCGa -3'
miRNA:   3'- -GCGGCa-GCGCGCCgUGGUGCGCGuGC- -5'
25792 3' -62.8 NC_005337.1 + 41309 0.79 0.097543
Target:  5'- gCGuuGUCcaGCGUGGCGuCCACGCGCACc -3'
miRNA:   3'- -GCggCAG--CGCGCCGU-GGUGCGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 105104 0.78 0.122199
Target:  5'- uGCgGUCGCGCGGCGCCGCGUuuuagGCuGCu -3'
miRNA:   3'- gCGgCAGCGCGCCGUGGUGCG-----CG-UGc -5'
25792 3' -62.8 NC_005337.1 + 88316 0.76 0.156307
Target:  5'- gGaCGUCaGCGUGGaCGCCACGCGCGCc -3'
miRNA:   3'- gCgGCAG-CGCGCC-GUGGUGCGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 52086 0.76 0.168112
Target:  5'- gGCCGUgCGCGCccGGCgGCCGCGUGCAgGu -3'
miRNA:   3'- gCGGCA-GCGCG--CCG-UGGUGCGCGUgC- -5'
25792 3' -62.8 NC_005337.1 + 100685 0.79 0.100032
Target:  5'- gCGCCGcgCGCGCGGC-CgACGCGaCGCGg -3'
miRNA:   3'- -GCGGCa-GCGCGCCGuGgUGCGC-GUGC- -5'
25792 3' -62.8 NC_005337.1 + 110343 0.79 0.10519
Target:  5'- gCGgCGUCGCGCGcGCcuGCCGCGgGCGCGc -3'
miRNA:   3'- -GCgGCAGCGCGC-CG--UGGUGCgCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.