miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25794 3' -55.5 NC_005337.1 + 99709 0.67 0.858072
Target:  5'- uGCgCGCGGCCaUCgUCGcGGACaGGACg- -3'
miRNA:   3'- -CG-GUGCCGG-AGaAGCaUCUG-CCUGag -5'
25794 3' -55.5 NC_005337.1 + 25674 0.69 0.761871
Target:  5'- cGCCGCGGCC-C-UCGaAGGCGGcgUCg -3'
miRNA:   3'- -CGGUGCCGGaGaAGCaUCUGCCugAG- -5'
25794 3' -55.5 NC_005337.1 + 69942 0.69 0.780758
Target:  5'- cGCCGCGGCgccacgCUCcgCGUGGugGGcACg- -3'
miRNA:   3'- -CGGUGCCG------GAGaaGCAUCugCC-UGag -5'
25794 3' -55.5 NC_005337.1 + 64523 0.69 0.799105
Target:  5'- gGCCACGGCCgucCUggagcUCGUcaaGGACGGcACc- -3'
miRNA:   3'- -CGGUGCCGGa--GA-----AGCA---UCUGCC-UGag -5'
25794 3' -55.5 NC_005337.1 + 63857 0.68 0.825459
Target:  5'- aCCAgGGCCUgaUCuuGUGGGCaaGGACUCc -3'
miRNA:   3'- cGGUgCCGGAgaAG--CAUCUG--CCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 35336 0.68 0.833898
Target:  5'- gGCCugGGCCguguUCggugagUCGUcggacggcuggcGGGCGGACg- -3'
miRNA:   3'- -CGGugCCGG----AGa-----AGCA------------UCUGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 84827 0.68 0.833898
Target:  5'- uGCCGCGGUaccaUCUggaGUAcauGACGGAcCUCu -3'
miRNA:   3'- -CGGUGCCGg---AGAag-CAU---CUGCCU-GAG- -5'
25794 3' -55.5 NC_005337.1 + 21405 0.67 0.850212
Target:  5'- gGCCGCGGCaucgUCgaCGUGGgccGCGGccaGCUCg -3'
miRNA:   3'- -CGGUGCCGg---AGaaGCAUC---UGCC---UGAG- -5'
25794 3' -55.5 NC_005337.1 + 103074 0.67 0.858072
Target:  5'- -gCACGGCCgaCUUCGUGGA---GCUCa -3'
miRNA:   3'- cgGUGCCGGa-GAAGCAUCUgccUGAG- -5'
25794 3' -55.5 NC_005337.1 + 45007 0.69 0.752248
Target:  5'- aGCaCGCGGCCaUCUaCGUGGGgagcgUGGACUg -3'
miRNA:   3'- -CG-GUGCCGG-AGAaGCAUCU-----GCCUGAg -5'
25794 3' -55.5 NC_005337.1 + 34613 0.7 0.742518
Target:  5'- gGCCGCGGaCCUCcugcuccUCGUugaAGACGGcgggcgucucGCUCa -3'
miRNA:   3'- -CGGUGCC-GGAGa------AGCA---UCUGCC----------UGAG- -5'
25794 3' -55.5 NC_005337.1 + 43453 0.7 0.732691
Target:  5'- cCCGCGGUgU--UCGUGGACGGGUUCa -3'
miRNA:   3'- cGGUGCCGgAgaAGCAUCUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 52129 0.81 0.192513
Target:  5'- gGCCAUGGCCU--UCGUGGACGcGugUCg -3'
miRNA:   3'- -CGGUGCCGGAgaAGCAUCUGC-CugAG- -5'
25794 3' -55.5 NC_005337.1 + 20770 0.81 0.212716
Target:  5'- gGCCGCGGCCacgcgCUUCGcggGGACGGGCg- -3'
miRNA:   3'- -CGGUGCCGGa----GAAGCa--UCUGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 75937 0.77 0.339767
Target:  5'- gGCCACGGUCUCgUCGUacuccugcuucgagAGcACGGACUUg -3'
miRNA:   3'- -CGGUGCCGGAGaAGCA--------------UC-UGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 97618 0.74 0.519478
Target:  5'- gGCCGCGGCCU--UCGcGGACgGGACg- -3'
miRNA:   3'- -CGGUGCCGGAgaAGCaUCUG-CCUGag -5'
25794 3' -55.5 NC_005337.1 + 110746 0.71 0.650644
Target:  5'- gGCCAUGGCCcggaugagccucuUCUUCGagcccGGAUGGACa- -3'
miRNA:   3'- -CGGUGCCGG-------------AGAAGCa----UCUGCCUGag -5'
25794 3' -55.5 NC_005337.1 + 99474 0.71 0.669126
Target:  5'- cGCgAgGGCgUCUUCGUGGccgugcggcgcuacGCGGACUg -3'
miRNA:   3'- -CGgUgCCGgAGAAGCAUC--------------UGCCUGAg -5'
25794 3' -55.5 NC_005337.1 + 35742 0.71 0.672198
Target:  5'- aGCaCGCGGCCg--UCG--GGCGGGCUCc -3'
miRNA:   3'- -CG-GUGCCGGagaAGCauCUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 46497 0.7 0.702716
Target:  5'- cGCCuuGGCCUCUaUGUccGCGGugUCc -3'
miRNA:   3'- -CGGugCCGGAGAaGCAucUGCCugAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.