miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25794 5' -60.1 NC_005337.1 + 101527 0.66 0.689023
Target:  5'- cUGGAGGCCGUGgacgugaccgcCGCCAGcGuGGa---- -3'
miRNA:   3'- -ACCUCCGGCAC-----------GCGGUC-CuCCguaac -5'
25794 5' -60.1 NC_005337.1 + 84046 0.66 0.668887
Target:  5'- cGGAGGCgCGcacGaCGCCcucgGGGAGGCGc-- -3'
miRNA:   3'- aCCUCCG-GCa--C-GCGG----UCCUCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 41078 0.66 0.668887
Target:  5'- aGGAGGUCGUGCGacauccaCGGGAaguugaGGUAc-- -3'
miRNA:   3'- aCCUCCGGCACGCg------GUCCU------CCGUaac -5'
25794 5' -60.1 NC_005337.1 + 30651 0.66 0.658771
Target:  5'- gGGAGGCUGccGCGUCGcgggccuuccGGGGGUAUa- -3'
miRNA:   3'- aCCUCCGGCa-CGCGGU----------CCUCCGUAac -5'
25794 5' -60.1 NC_005337.1 + 60571 0.66 0.647619
Target:  5'- aGGucGCUGUccgggaagaaguuGCGCCGGaAGGCGUUGu -3'
miRNA:   3'- aCCucCGGCA-------------CGCGGUCcUCCGUAAC- -5'
25794 5' -60.1 NC_005337.1 + 41603 0.66 0.699025
Target:  5'- aGGGcguGGUCGUG-GCgaAGGAGGCcgUGg -3'
miRNA:   3'- aCCU---CCGGCACgCGg-UCCUCCGuaAC- -5'
25794 5' -60.1 NC_005337.1 + 33686 0.66 0.68802
Target:  5'- -cGAGGCCGgcggGCGCCAccuccucgaagguGGuGGCGc-- -3'
miRNA:   3'- acCUCCGGCa---CGCGGU-------------CCuCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 123697 0.66 0.668887
Target:  5'- cGGAcGCCGUGCGgCGGcuGGGCAc-- -3'
miRNA:   3'- aCCUcCGGCACGCgGUCc-UCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 88263 0.66 0.658771
Target:  5'- cGGcGcGCCGgcggGCGCCGcGGAGGaCAUg- -3'
miRNA:   3'- aCCuC-CGGCa---CGCGGU-CCUCC-GUAac -5'
25794 5' -60.1 NC_005337.1 + 93829 0.66 0.648634
Target:  5'- cGGcgucgucaaGGGCCGUGCGCUccggaAGGAGcGCc--- -3'
miRNA:   3'- aCC---------UCCGGCACGCGG-----UCCUC-CGuaac -5'
25794 5' -60.1 NC_005337.1 + 25800 0.66 0.678974
Target:  5'- -cGAuGGCCGUGCaGCUcuuggcGGAGGCGUa- -3'
miRNA:   3'- acCU-CCGGCACG-CGGu-----CCUCCGUAac -5'
25794 5' -60.1 NC_005337.1 + 28928 0.66 0.693029
Target:  5'- cGGAGGCCuucacgccgacagGCG-CAGGAGGuUGUUGg -3'
miRNA:   3'- aCCUCCGGca-----------CGCgGUCCUCC-GUAAC- -5'
25794 5' -60.1 NC_005337.1 + 124509 0.66 0.668887
Target:  5'- aGGAGGCCG-GUGCCAacccGGCGc-- -3'
miRNA:   3'- aCCUCCGGCaCGCGGUccu-CCGUaac -5'
25794 5' -60.1 NC_005337.1 + 35964 0.66 0.648634
Target:  5'- gGGAcGCCGccGCGgCAGGGGGUAa-- -3'
miRNA:   3'- aCCUcCGGCa-CGCgGUCCUCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 129191 0.66 0.699025
Target:  5'- aUGGAGGCCG-GUGCCuucguGGAcGCc--- -3'
miRNA:   3'- -ACCUCCGGCaCGCGGu----CCUcCGuaac -5'
25794 5' -60.1 NC_005337.1 + 35265 0.66 0.648634
Target:  5'- cGcAGGCCGcGCGCaccuCGGGGGGCGg-- -3'
miRNA:   3'- aCcUCCGGCaCGCG----GUCCUCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 116131 0.66 0.668887
Target:  5'- gUGGA-GCUGcGCGCCuGGGGGCc--- -3'
miRNA:   3'- -ACCUcCGGCaCGCGGuCCUCCGuaac -5'
25794 5' -60.1 NC_005337.1 + 93274 0.67 0.608035
Target:  5'- gGcGAGGCCGggggugcgucgGCGCCuGGuGGCGg-- -3'
miRNA:   3'- aC-CUCCGGCa----------CGCGGuCCuCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 29544 0.67 0.597911
Target:  5'- cGGcGGCCGUGCacccacucgcuGCuCAGGuGGCAc-- -3'
miRNA:   3'- aCCuCCGGCACG-----------CG-GUCCuCCGUaac -5'
25794 5' -60.1 NC_005337.1 + 69367 0.67 0.638484
Target:  5'- cGGGccGGCCGcuaGCGCCAGGuccgccucugugAGGCGg-- -3'
miRNA:   3'- aCCU--CCGGCa--CGCGGUCC------------UCCGUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.