miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25877 5' -57.1 NC_005337.1 + 103453 0.66 0.851563
Target:  5'- cCCGCACguGaugGaGAUCGUGGACg- -3'
miRNA:   3'- -GGCGUGguCgaaCgCUGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 128215 0.66 0.851563
Target:  5'- -gGCGCC-GCUcGUGGCCGcGGGCg- -3'
miRNA:   3'- ggCGUGGuCGAaCGCUGGCaCCUGaa -5'
25877 5' -57.1 NC_005337.1 + 84074 0.66 0.851563
Target:  5'- gCGCagggcggcggaGCCAGagggUUGCGGCCGUccGGACg- -3'
miRNA:   3'- gGCG-----------UGGUCg---AACGCUGGCA--CCUGaa -5'
25877 5' -57.1 NC_005337.1 + 97777 0.66 0.843542
Target:  5'- gUCGCGCCgAGCgccGCGGCCGcGGcCa- -3'
miRNA:   3'- -GGCGUGG-UCGaa-CGCUGGCaCCuGaa -5'
25877 5' -57.1 NC_005337.1 + 18659 0.66 0.843542
Target:  5'- gCCGcCGCCGGCggGCGGauCCGaGGGCc- -3'
miRNA:   3'- -GGC-GUGGUCGaaCGCU--GGCaCCUGaa -5'
25877 5' -57.1 NC_005337.1 + 72465 0.66 0.843542
Target:  5'- gCCGcCGCCAuGCgcGUGGaCGUGGACUa -3'
miRNA:   3'- -GGC-GUGGU-CGaaCGCUgGCACCUGAa -5'
25877 5' -57.1 NC_005337.1 + 98727 0.66 0.843542
Target:  5'- gCgGCGCCcuGCgcgUGCuGACCGUcauGGACUUc -3'
miRNA:   3'- -GgCGUGGu-CGa--ACG-CUGGCA---CCUGAA- -5'
25877 5' -57.1 NC_005337.1 + 108641 0.66 0.843542
Target:  5'- aCGCgGCCguGGCggGCGACCGcgcGGACg- -3'
miRNA:   3'- gGCG-UGG--UCGaaCGCUGGCa--CCUGaa -5'
25877 5' -57.1 NC_005337.1 + 80175 0.66 0.835327
Target:  5'- gCCGUGCCGGCgcGCGgacgcgcuccuGCCGcGGGCg- -3'
miRNA:   3'- -GGCGUGGUCGaaCGC-----------UGGCaCCUGaa -5'
25877 5' -57.1 NC_005337.1 + 53250 0.66 0.835327
Target:  5'- -gGCACCAGaua-CGGcCCGUGGACg- -3'
miRNA:   3'- ggCGUGGUCgaacGCU-GGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 68248 0.66 0.835327
Target:  5'- gCGCgGCCGGCgcguggGCGAgCGUcgaGGACUUc -3'
miRNA:   3'- gGCG-UGGUCGaa----CGCUgGCA---CCUGAA- -5'
25877 5' -57.1 NC_005337.1 + 103992 0.66 0.835327
Target:  5'- gCCGUcCUGGCgcucaccUGCGcGCCGUGGACc- -3'
miRNA:   3'- -GGCGuGGUCGa------ACGC-UGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 39647 0.66 0.835327
Target:  5'- aCGCAgCGGC--GCGGCCGcgugGGGCg- -3'
miRNA:   3'- gGCGUgGUCGaaCGCUGGCa---CCUGaa -5'
25877 5' -57.1 NC_005337.1 + 45180 0.66 0.835327
Target:  5'- gCGUACCGGCUggccGUGcCCG-GGGCg- -3'
miRNA:   3'- gGCGUGGUCGAa---CGCuGGCaCCUGaa -5'
25877 5' -57.1 NC_005337.1 + 66853 0.66 0.835327
Target:  5'- cCCGaga-AGCgcaagUGCuGGCCGUGGACUUc -3'
miRNA:   3'- -GGCguggUCGa----ACG-CUGGCACCUGAA- -5'
25877 5' -57.1 NC_005337.1 + 33397 0.66 0.818344
Target:  5'- cCCGCGaagUAGCUcugGCGgccGCCGUGGAUg- -3'
miRNA:   3'- -GGCGUg--GUCGAa--CGC---UGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 5407 0.66 0.818344
Target:  5'- gCGCAgCAGCUgcgcaguuCGGCCGUGGuCa- -3'
miRNA:   3'- gGCGUgGUCGAac------GCUGGCACCuGaa -5'
25877 5' -57.1 NC_005337.1 + 53015 0.66 0.809591
Target:  5'- cCCGC-CCGGC-UGCGGCuCGUG-ACg- -3'
miRNA:   3'- -GGCGuGGUCGaACGCUG-GCACcUGaa -5'
25877 5' -57.1 NC_005337.1 + 2098 0.66 0.809591
Target:  5'- gCCaGCGCCAGCgccuccgucGCGuCCGUGuGGCa- -3'
miRNA:   3'- -GG-CGUGGUCGaa-------CGCuGGCAC-CUGaa -5'
25877 5' -57.1 NC_005337.1 + 33085 0.66 0.809591
Target:  5'- aUCGCACCAGCgacGCGGCCcgcugcccuguGUGGu--- -3'
miRNA:   3'- -GGCGUGGUCGaa-CGCUGG-----------CACCugaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.