miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25877 5' -57.1 NC_005337.1 + 71872 1.06 0.002812
Target:  5'- gCCGCACCAGCUUGCGACCGUGGACUUu -3'
miRNA:   3'- -GGCGUGGUCGAACGCUGGCACCUGAA- -5'
25877 5' -57.1 NC_005337.1 + 58910 0.77 0.247717
Target:  5'- gCGCGgcaggacuCCGGCgcgGCGACCGUGGACg- -3'
miRNA:   3'- gGCGU--------GGUCGaa-CGCUGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 68484 0.75 0.328471
Target:  5'- gCCGCACCGggcgccgcGCUgcugGCGGCCGUGGGu-- -3'
miRNA:   3'- -GGCGUGGU--------CGAa---CGCUGGCACCUgaa -5'
25877 5' -57.1 NC_005337.1 + 115478 0.75 0.351478
Target:  5'- cUCGCACCGGUgcacgcacGgGGCCGUGGACg- -3'
miRNA:   3'- -GGCGUGGUCGaa------CgCUGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 71896 0.74 0.387243
Target:  5'- aCCGCACCAGCgaccUGCGcACCGccuucgacgacagcgUGGACc- -3'
miRNA:   3'- -GGCGUGGUCGa---ACGC-UGGC---------------ACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 91534 0.74 0.409473
Target:  5'- cCCGCACCGcacGCUcggcGCGGCCGUGGcCa- -3'
miRNA:   3'- -GGCGUGGU---CGAa---CGCUGGCACCuGaa -5'
25877 5' -57.1 NC_005337.1 + 90219 0.73 0.467419
Target:  5'- gCGcCGCCAGCUUGCaGAgguacucugucucguCCGUGGGCa- -3'
miRNA:   3'- gGC-GUGGUCGAACG-CU---------------GGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 101518 0.72 0.473069
Target:  5'- uCCGCG-CGGCUggaGGCCGUGGACg- -3'
miRNA:   3'- -GGCGUgGUCGAacgCUGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 52372 0.72 0.473069
Target:  5'- gCCGCugaCGGC-UGCGggGCCGUGGACg- -3'
miRNA:   3'- -GGCGug-GUCGaACGC--UGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 39521 0.72 0.492142
Target:  5'- aCCGCggGCCAGCUcGCGGUCGUGG-CUg -3'
miRNA:   3'- -GGCG--UGGUCGAaCGCUGGCACCuGAa -5'
25877 5' -57.1 NC_005337.1 + 130946 0.72 0.501812
Target:  5'- gCCGUuccuggacGCCGGC--GUGGCCGUGGACg- -3'
miRNA:   3'- -GGCG--------UGGUCGaaCGCUGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 95613 0.71 0.551294
Target:  5'- gCGCGCCauGGCg-GCGuCCGUGGGCg- -3'
miRNA:   3'- gGCGUGG--UCGaaCGCuGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 59070 0.71 0.561381
Target:  5'- cCUGgGCCGGCagaaGACCGUGGACa- -3'
miRNA:   3'- -GGCgUGGUCGaacgCUGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 8068 0.71 0.561381
Target:  5'- aCGCACUcGCgcgugGCGuCCGUGGGCa- -3'
miRNA:   3'- gGCGUGGuCGaa---CGCuGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 82178 0.7 0.581697
Target:  5'- gCGCACCuGCacGCGGCCGccGGGCg- -3'
miRNA:   3'- gGCGUGGuCGaaCGCUGGCa-CCUGaa -5'
25877 5' -57.1 NC_005337.1 + 95713 0.7 0.591913
Target:  5'- uCCGCGCgCAGCa-GCGACCccGGACg- -3'
miRNA:   3'- -GGCGUG-GUCGaaCGCUGGcaCCUGaa -5'
25877 5' -57.1 NC_005337.1 + 106975 0.7 0.60216
Target:  5'- cUCGCACauaAGCUucUGCG-UCGUGGACa- -3'
miRNA:   3'- -GGCGUGg--UCGA--ACGCuGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 65129 0.7 0.60216
Target:  5'- gUCGCACUGGCcgcgaagGCGgccGCCGUGGACc- -3'
miRNA:   3'- -GGCGUGGUCGaa-----CGC---UGGCACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 114581 0.7 0.608319
Target:  5'- -gGCGCCGGCgcuguacgccacGCGGCCGcUGGACa- -3'
miRNA:   3'- ggCGUGGUCGaa----------CGCUGGC-ACCUGaa -5'
25877 5' -57.1 NC_005337.1 + 115208 0.7 0.612428
Target:  5'- gCCGCACCuGC-UGUGGCCGcGGcACa- -3'
miRNA:   3'- -GGCGUGGuCGaACGCUGGCaCC-UGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.