miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25941 3' -50.4 NC_005337.1 + 23178 0.68 0.967192
Target:  5'- gGAGGCGCUGCUGGACg---GCcuGGCGc -3'
miRNA:   3'- -CUUUGCGGCGAUUUGaagaUGc-CCGC- -5'
25941 3' -50.4 NC_005337.1 + 1274 0.69 0.956305
Target:  5'- aGGAugGcCCGCggAGGCgggUCgGCGGGCa -3'
miRNA:   3'- -CUUugC-GGCGa-UUUGa--AGaUGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 68191 0.69 0.956305
Target:  5'- uGAGCGCgGCcccggGGGCgccgCUGCGGGCc -3'
miRNA:   3'- cUUUGCGgCGa----UUUGaa--GAUGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 1525 0.69 0.956305
Target:  5'- --cGCGuCCGCc--ACUUCgugUGCGGGCGg -3'
miRNA:   3'- cuuUGC-GGCGauuUGAAG---AUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 10807 0.69 0.956305
Target:  5'- cGAAcCGCUGCgUGGACgcc-GCGGGCGg -3'
miRNA:   3'- -CUUuGCGGCG-AUUUGaagaUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 29160 0.69 0.956305
Target:  5'- cGGAGCGCCGCgucguccAGCUcCggagACGcGGCGg -3'
miRNA:   3'- -CUUUGCGGCGau-----UUGAaGa---UGC-CCGC- -5'
25941 3' -50.4 NC_005337.1 + 63392 0.69 0.960175
Target:  5'- gGAGGCGCCGCUGcuggcgauGACgagCUcgacgaACuGGGCGa -3'
miRNA:   3'- -CUUUGCGGCGAU--------UUGaa-GA------UG-CCCGC- -5'
25941 3' -50.4 NC_005337.1 + 105071 0.69 0.962739
Target:  5'- cGAGACGCUGUucucgucugaggacUGAACcUCUGCGGucgcGCGg -3'
miRNA:   3'- -CUUUGCGGCG--------------AUUUGaAGAUGCC----CGC- -5'
25941 3' -50.4 NC_005337.1 + 66096 0.69 0.963802
Target:  5'- gGAGGCGCUGUgcGGCgUCUGCGcGCGc -3'
miRNA:   3'- -CUUUGCGGCGauUUGaAGAUGCcCGC- -5'
25941 3' -50.4 NC_005337.1 + 69638 0.69 0.955501
Target:  5'- uGGACGCCGCgauggaggaggaGGACUUCgugGCGGcGCu -3'
miRNA:   3'- cUUUGCGGCGa-----------UUUGAAGa--UGCC-CGc -5'
25941 3' -50.4 NC_005337.1 + 50119 0.69 0.947816
Target:  5'- cGGGCGCuCGCUGGcgcGCaUCUGCGcGGUGg -3'
miRNA:   3'- cUUUGCG-GCGAUU---UGaAGAUGC-CCGC- -5'
25941 3' -50.4 NC_005337.1 + 127849 0.7 0.927742
Target:  5'- --cACGCCGCUccACaUCUgccucACGGGCa -3'
miRNA:   3'- cuuUGCGGCGAuuUGaAGA-----UGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 103542 0.78 0.536392
Target:  5'- aGGAGCGCgCGCUGuacGACUUCUGCGacuucccGGCGg -3'
miRNA:   3'- -CUUUGCG-GCGAU---UUGAAGAUGC-------CCGC- -5'
25941 3' -50.4 NC_005337.1 + 42889 0.76 0.665262
Target:  5'- cGggGCGCCGCcgAGGuCUUCgaGCGGGCu -3'
miRNA:   3'- -CuuUGCGGCGa-UUU-GAAGa-UGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 37641 0.73 0.825527
Target:  5'- cAGGCGCCGCggucGGGCUUCaccgcgAUGGGCa -3'
miRNA:   3'- cUUUGCGGCGa---UUUGAAGa-----UGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 42519 0.72 0.851296
Target:  5'- gGAGACGgacaugguguucCCGCcGGACgcgCUGCGGGCGc -3'
miRNA:   3'- -CUUUGC------------GGCGaUUUGaa-GAUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 91194 0.72 0.851296
Target:  5'- cGGGCGCCGCgauGCgg--ACGGGCGc -3'
miRNA:   3'- cUUUGCGGCGauuUGaagaUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 6552 0.71 0.91613
Target:  5'- --uGCGCCGgaAGACUUCcgcUACGGcGCa -3'
miRNA:   3'- cuuUGCGGCgaUUUGAAG---AUGCC-CGc -5'
25941 3' -50.4 NC_005337.1 + 56449 0.7 0.922067
Target:  5'- uGGACGgCGCgguggccgAGACcaaggUCUACGGGCGc -3'
miRNA:   3'- cUUUGCgGCGa-------UUUGa----AGAUGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 28713 0.7 0.927742
Target:  5'- --cACGCgGUcgUGGACUUUUAUGGGUGg -3'
miRNA:   3'- cuuUGCGgCG--AUUUGAAGAUGCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.