miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25941 5' -52.9 NC_005337.1 + 66792 0.66 0.973494
Target:  5'- gUCUCcagCCGCGAGAcGCCCucGAcgaaGCGGCGg -3'
miRNA:   3'- gGGAGa--GGUGUUUU-CGGG--CU----UGUCGC- -5'
25941 5' -52.9 NC_005337.1 + 36659 0.66 0.973494
Target:  5'- uCCCg-UCCGCGAAGGCC---GCGGCc -3'
miRNA:   3'- -GGGagAGGUGUUUUCGGgcuUGUCGc -5'
25941 5' -52.9 NC_005337.1 + 132278 0.66 0.973219
Target:  5'- aCCCggacaagCCGCAGcuGAcGCCCGAcccggcgugcacgGCGGCGg -3'
miRNA:   3'- -GGGaga----GGUGUU--UU-CGGGCU-------------UGUCGC- -5'
25941 5' -52.9 NC_005337.1 + 123556 0.66 0.970648
Target:  5'- gCCCUgaCCACAu-GGCCgUGGAC-GCGg -3'
miRNA:   3'- -GGGAgaGGUGUuuUCGG-GCUUGuCGC- -5'
25941 5' -52.9 NC_005337.1 + 96860 0.66 0.970648
Target:  5'- cCCCggCUCCGCGAcuccGCgCGGaugcGCGGCGu -3'
miRNA:   3'- -GGGa-GAGGUGUUuu--CGgGCU----UGUCGC- -5'
25941 5' -52.9 NC_005337.1 + 6218 0.66 0.970648
Target:  5'- aCCCUgUCCAgGAGGGCgUUGGGCAcGUGc -3'
miRNA:   3'- -GGGAgAGGUgUUUUCG-GGCUUGU-CGC- -5'
25941 5' -52.9 NC_005337.1 + 110763 0.66 0.970648
Target:  5'- gCCUCUUCuuc-GAGCCCGGAUGGaCa -3'
miRNA:   3'- gGGAGAGGuguuUUCGGGCUUGUC-Gc -5'
25941 5' -52.9 NC_005337.1 + 120660 0.66 0.970648
Target:  5'- uCCCUCggCgGCGAc-GCCCGGcuGGCGg -3'
miRNA:   3'- -GGGAGa-GgUGUUuuCGGGCUugUCGC- -5'
25941 5' -52.9 NC_005337.1 + 72346 0.66 0.970648
Target:  5'- aCCCUCgcaacgccaaguUCCGCGcgAucGCgCGGACGGCc -3'
miRNA:   3'- -GGGAG------------AGGUGU--UuuCGgGCUUGUCGc -5'
25941 5' -52.9 NC_005337.1 + 126817 0.66 0.970648
Target:  5'- gCCCUCgucgCCACGGAcGCCgacgUGAACuuccggGGCGa -3'
miRNA:   3'- -GGGAGa---GGUGUUUuCGG----GCUUG------UCGC- -5'
25941 5' -52.9 NC_005337.1 + 61585 0.66 0.970648
Target:  5'- uCCUUCUCCu---GGGCCUGGAagAGCa -3'
miRNA:   3'- -GGGAGAGGuguuUUCGGGCUUg-UCGc -5'
25941 5' -52.9 NC_005337.1 + 91477 0.66 0.970648
Target:  5'- gCUCUCgugcgccgCCACGAAGgucacgcugccGCCCGAGCAcacgaacgcGCGg -3'
miRNA:   3'- -GGGAGa-------GGUGUUUU-----------CGGGCUUGU---------CGC- -5'
25941 5' -52.9 NC_005337.1 + 74120 0.66 0.967589
Target:  5'- gCCUggUCCGCAAcGGCgCCGuguacucgcacGGCAGCGa -3'
miRNA:   3'- -GGGagAGGUGUUuUCG-GGC-----------UUGUCGC- -5'
25941 5' -52.9 NC_005337.1 + 85344 0.66 0.967589
Target:  5'- gCCUUCacgCCGCAGuuGCCgGAcGCGGUGc -3'
miRNA:   3'- -GGGAGa--GGUGUUuuCGGgCU-UGUCGC- -5'
25941 5' -52.9 NC_005337.1 + 8064 0.66 0.967589
Target:  5'- gCCUcCUCCGCGAccGCgaGGACGcGCGa -3'
miRNA:   3'- gGGA-GAGGUGUUuuCGggCUUGU-CGC- -5'
25941 5' -52.9 NC_005337.1 + 37764 0.66 0.967589
Target:  5'- aCCUUCUCgcgcaGCGAGGGCuuGAagaaguacaugaGCGGCa -3'
miRNA:   3'- -GGGAGAGg----UGUUUUCGggCU------------UGUCGc -5'
25941 5' -52.9 NC_005337.1 + 66037 0.66 0.967589
Target:  5'- gUCCUCUUCGuggAGGAGCCCcaGGGgAGCGa -3'
miRNA:   3'- -GGGAGAGGUg--UUUUCGGG--CUUgUCGC- -5'
25941 5' -52.9 NC_005337.1 + 24829 0.66 0.967589
Target:  5'- uUCCUCgCCGu----GCUCGAGCGGCGc -3'
miRNA:   3'- -GGGAGaGGUguuuuCGGGCUUGUCGC- -5'
25941 5' -52.9 NC_005337.1 + 41177 0.66 0.967589
Target:  5'- cCCCgaUCUCCACGucgauGAGCuCCGuggagagguCGGCGc -3'
miRNA:   3'- -GGG--AGAGGUGUu----UUCG-GGCuu-------GUCGC- -5'
25941 5' -52.9 NC_005337.1 + 62283 0.66 0.967271
Target:  5'- aCCUUCUUCguGCGcGAGGCCaccauggCGAACAGCa -3'
miRNA:   3'- -GGGAGAGG--UGU-UUUCGG-------GCUUGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.