miRNA display CGI


Results 1 - 20 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 58316 0.72 0.611756
Target:  5'- cGCCGCGCGaguCGCGCAGcucGUAGUaCGUCUUc -3'
miRNA:   3'- -CGGUGCGU---GCGCGUC---UAUUA-GCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 129690 0.74 0.480965
Target:  5'- aCCA-GCACGCGCAGucgccgCGCCCg -3'
miRNA:   3'- cGGUgCGUGCGCGUCuauua-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 5570 0.74 0.487706
Target:  5'- cGCaGCGCGCuCGCAGAUcagcugcgcuauucGGUCGCCCg -3'
miRNA:   3'- -CGgUGCGUGcGCGUCUA--------------UUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 133458 0.74 0.487706
Target:  5'- gGCC-CGCGCGCGCGGAcggcuccgcggagcUGGUCuGCCUc -3'
miRNA:   3'- -CGGuGCGUGCGCGUCU--------------AUUAG-CGGGa -5'
25960 3' -55.5 NC_005337.1 + 98878 0.74 0.490608
Target:  5'- aCCGCGCcgcGCGCGCGGAcUGcgCGCUCg -3'
miRNA:   3'- cGGUGCG---UGCGCGUCU-AUuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 133654 0.74 0.499363
Target:  5'- cGCCGCGCugGacgccgaCGCGGAgu-UCGCCUg -3'
miRNA:   3'- -CGGUGCGugC-------GCGUCUauuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 109899 0.73 0.540061
Target:  5'- cGCCACGUGCGCGUGGAagacguGUCGCgUg -3'
miRNA:   3'- -CGGUGCGUGCGCGUCUau----UAGCGgGa -5'
25960 3' -55.5 NC_005337.1 + 126213 0.72 0.58079
Target:  5'- cGCCACGCGCGaguGCGuGAUGGagcUgGCCCUc -3'
miRNA:   3'- -CGGUGCGUGCg--CGU-CUAUU---AgCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 100227 0.72 0.611756
Target:  5'- cGCCGCGUGCGCGU-GAUcgcGGUCccGCCCg -3'
miRNA:   3'- -CGGUGCGUGCGCGuCUA---UUAG--CGGGa -5'
25960 3' -55.5 NC_005337.1 + 30276 0.74 0.471415
Target:  5'- uCCACG-GCGCGCAGGUGAgCGCCa- -3'
miRNA:   3'- cGGUGCgUGCGCGUCUAUUaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 76869 0.74 0.45634
Target:  5'- gGCCGCGUGCGCGCucgucaugcuauuugGGGUG-UCGCCUc -3'
miRNA:   3'- -CGGUGCGUGCGCG---------------UCUAUuAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 121571 0.74 0.452611
Target:  5'- cGCgGCGCGCGCGCGGA----CGCCa- -3'
miRNA:   3'- -CGgUGCGUGCGCGUCUauuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 97060 0.84 0.133301
Target:  5'- cGCCACGCACGCGCGGcgcgcgGUGGUCugcguGCCCa -3'
miRNA:   3'- -CGGUGCGUGCGCGUC------UAUUAG-----CGGGa -5'
25960 3' -55.5 NC_005337.1 + 54014 0.82 0.159937
Target:  5'- cGUCGCGCACGCGCAc---GUCGCCCa -3'
miRNA:   3'- -CGGUGCGUGCGCGUcuauUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 41393 0.82 0.172761
Target:  5'- aCCGCGCGCGgGCAGAUGA-CGUCCg -3'
miRNA:   3'- cGGUGCGUGCgCGUCUAUUaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 6897 0.8 0.216862
Target:  5'- uGUCGCGCGCGCGCGGGUccgCGCCg- -3'
miRNA:   3'- -CGGUGCGUGCGCGUCUAuuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 109319 0.78 0.283469
Target:  5'- aCCACGCACGCGguGAggauGUCGUUCa -3'
miRNA:   3'- cGGUGCGUGCGCguCUau--UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 68141 0.76 0.39879
Target:  5'- gGCCGCGCGCGCcccuagcgggcgGCGGAUcuucguggccgAGUaCGCCCUg -3'
miRNA:   3'- -CGGUGCGUGCG------------CGUCUA-----------UUA-GCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 97998 0.75 0.407474
Target:  5'- gGCCGCGUuCGCGCAGcggcUGGUCGCgCUg -3'
miRNA:   3'- -CGGUGCGuGCGCGUCu---AUUAGCGgGA- -5'
25960 3' -55.5 NC_005337.1 + 31006 0.75 0.434223
Target:  5'- gGCCACGUACGUGUAGAggUAGUgGgCCa -3'
miRNA:   3'- -CGGUGCGUGCGCGUCU--AUUAgCgGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.