miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25964 3' -56.1 NC_005337.1 + 130726 0.97 0.017834
Target:  5'- gUCGCUCGGCGAC-AGAUCUACCUGCGc -3'
miRNA:   3'- -AGCGAGCCGCUGcUCUAGAUGGACGC- -5'
25964 3' -56.1 NC_005337.1 + 14692 0.76 0.372695
Target:  5'- gCGCUCGGCGACcAGGUgcgggUACCUGCu -3'
miRNA:   3'- aGCGAGCCGCUGcUCUAg----AUGGACGc -5'
25964 3' -56.1 NC_005337.1 + 115338 0.76 0.372695
Target:  5'- aCGCcCGGCGGCGggcGGAUCUGCgUGCc -3'
miRNA:   3'- aGCGaGCCGCUGC---UCUAGAUGgACGc -5'
25964 3' -56.1 NC_005337.1 + 52703 0.75 0.397646
Target:  5'- gCGCUUcGCgGACGAGGcCUACCUGCGc -3'
miRNA:   3'- aGCGAGcCG-CUGCUCUaGAUGGACGC- -5'
25964 3' -56.1 NC_005337.1 + 2975 0.74 0.47854
Target:  5'- cUCGCacUCGGCGACGAacgC-GCCUGCGa -3'
miRNA:   3'- -AGCG--AGCCGCUGCUcuaGaUGGACGC- -5'
25964 3' -56.1 NC_005337.1 + 117152 0.74 0.488031
Target:  5'- aUGCacgaCGGCGGCGAGuUCUGCCggGCGc -3'
miRNA:   3'- aGCGa---GCCGCUGCUCuAGAUGGa-CGC- -5'
25964 3' -56.1 NC_005337.1 + 3495 0.72 0.556661
Target:  5'- cCGCacCGGCGGCGcccAGGUCUgcgcgaaguccACCUGCGa -3'
miRNA:   3'- aGCGa-GCCGCUGC---UCUAGA-----------UGGACGC- -5'
25964 3' -56.1 NC_005337.1 + 80044 0.72 0.566718
Target:  5'- gCGC-CGGaCGAgGAGAUCUACgccuuCUGCGa -3'
miRNA:   3'- aGCGaGCC-GCUgCUCUAGAUG-----GACGC- -5'
25964 3' -56.1 NC_005337.1 + 14052 0.72 0.566718
Target:  5'- cUGCUCGGCGAUGcuGUCcGCCUcgGCGa -3'
miRNA:   3'- aGCGAGCCGCUGCucUAGaUGGA--CGC- -5'
25964 3' -56.1 NC_005337.1 + 30180 0.72 0.586963
Target:  5'- gCGCUCGGCGAUGucgaagcuGAUCUGgUUGuCGg -3'
miRNA:   3'- aGCGAGCCGCUGCu-------CUAGAUgGAC-GC- -5'
25964 3' -56.1 NC_005337.1 + 48414 0.72 0.597138
Target:  5'- aCGCUCGGCGuacuggcgcuguGCGuGGUgUAUCUGCu -3'
miRNA:   3'- aGCGAGCCGC------------UGCuCUAgAUGGACGc -5'
25964 3' -56.1 NC_005337.1 + 8690 0.72 0.597138
Target:  5'- aUCGcCUCGGCGuCGuAGAUgUACCUGg- -3'
miRNA:   3'- -AGC-GAGCCGCuGC-UCUAgAUGGACgc -5'
25964 3' -56.1 NC_005337.1 + 123416 0.71 0.617557
Target:  5'- cCGCUCGGCGAgCGAGcUCUGCaaUGUc -3'
miRNA:   3'- aGCGAGCCGCU-GCUCuAGAUGg-ACGc -5'
25964 3' -56.1 NC_005337.1 + 98317 0.71 0.617557
Target:  5'- cUGCcgCGGCGGCGucccuacccGGUgCUGCCUGCGa -3'
miRNA:   3'- aGCGa-GCCGCUGCu--------CUA-GAUGGACGC- -5'
25964 3' -56.1 NC_005337.1 + 123195 0.71 0.638021
Target:  5'- cUGCggucgCGGCGGCGAccGAUCUgcgGCCUcGCGa -3'
miRNA:   3'- aGCGa----GCCGCUGCU--CUAGA---UGGA-CGC- -5'
25964 3' -56.1 NC_005337.1 + 121646 0.71 0.638021
Target:  5'- aUCGaCgacgCGGCGAccccCGAGGUCguggACCUGCu -3'
miRNA:   3'- -AGC-Ga---GCCGCU----GCUCUAGa---UGGACGc -5'
25964 3' -56.1 NC_005337.1 + 38868 0.71 0.658466
Target:  5'- aCGCUCGuGCGGgcgcacacCGcGAcCUACCUGCGg -3'
miRNA:   3'- aGCGAGC-CGCU--------GCuCUaGAUGGACGC- -5'
25964 3' -56.1 NC_005337.1 + 127444 0.7 0.699033
Target:  5'- aCGuCUCGGagGAUGAGGUCcgccGCCUGCu -3'
miRNA:   3'- aGC-GAGCCg-CUGCUCUAGa---UGGACGc -5'
25964 3' -56.1 NC_005337.1 + 44278 0.7 0.709057
Target:  5'- aCGCgcgCGGCGACGAGGgcaUUUACg-GCGc -3'
miRNA:   3'- aGCGa--GCCGCUGCUCU---AGAUGgaCGC- -5'
25964 3' -56.1 NC_005337.1 + 97068 0.7 0.709057
Target:  5'- aCGCgCGGCGcGCGGuGGUCUGCgUGCc -3'
miRNA:   3'- aGCGaGCCGC-UGCU-CUAGAUGgACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.