miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26020 3' -53.7 NC_005342.2 + 24773 0.66 0.773303
Target:  5'- uAUCAcgaUUCCGCAaaacGGCGcacCGACCGacgUGACg -3'
miRNA:   3'- -UAGU---AAGGCGU----CUGCa--GCUGGC---ACUG- -5'
26020 3' -53.7 NC_005342.2 + 33516 0.66 0.773303
Target:  5'- gAUCGaugCUGCGGACG-CGAuauuacCCGUGAUg -3'
miRNA:   3'- -UAGUaa-GGCGUCUGCaGCU------GGCACUG- -5'
26020 3' -53.7 NC_005342.2 + 30424 0.66 0.762922
Target:  5'- cUUcgUCCuggaaGCuGGCGagcUCGGCCGUGGCg -3'
miRNA:   3'- uAGuaAGG-----CGuCUGC---AGCUGGCACUG- -5'
26020 3' -53.7 NC_005342.2 + 44367 0.66 0.762922
Target:  5'- -aCGgcCCGCAGGCGccCGACUG-GGCg -3'
miRNA:   3'- uaGUaaGGCGUCUGCa-GCUGGCaCUG- -5'
26020 3' -53.7 NC_005342.2 + 42921 0.66 0.7524
Target:  5'- uUCAgcgCCGCGccGACGUCGGCCa---- -3'
miRNA:   3'- uAGUaa-GGCGU--CUGCAGCUGGcacug -5'
26020 3' -53.7 NC_005342.2 + 19215 0.67 0.688116
Target:  5'- -gCGUUCCGCAcGGCGcUCGAgcaauacgggcuggaCGUGACg -3'
miRNA:   3'- uaGUAAGGCGU-CUGC-AGCUg--------------GCACUG- -5'
26020 3' -53.7 NC_005342.2 + 37312 0.67 0.687002
Target:  5'- -gCGUgcaCCgGCcGGCG-CGACCGUGACg -3'
miRNA:   3'- uaGUAa--GG-CGuCUGCaGCUGGCACUG- -5'
26020 3' -53.7 NC_005342.2 + 8660 0.67 0.675839
Target:  5'- -gCGUUCaGCAcGGCGaacgugcCGACCGUGACg -3'
miRNA:   3'- uaGUAAGgCGU-CUGCa------GCUGGCACUG- -5'
26020 3' -53.7 NC_005342.2 + 45561 0.68 0.653394
Target:  5'- gGUCGgugCUGCucGAUGUCGAUCGUGuCg -3'
miRNA:   3'- -UAGUaa-GGCGu-CUGCAGCUGGCACuG- -5'
26020 3' -53.7 NC_005342.2 + 45943 0.7 0.527413
Target:  5'- ------gCGCGGGCGUCGaugugaucgacgcgGCCGUGACg -3'
miRNA:   3'- uaguaagGCGUCUGCAGC--------------UGGCACUG- -5'
26020 3' -53.7 NC_005342.2 + 16528 0.74 0.296511
Target:  5'- cGUCGagaUUCCGCAGaucGCGUCGAgCGUcGACg -3'
miRNA:   3'- -UAGU---AAGGCGUC---UGCAGCUgGCA-CUG- -5'
26020 3' -53.7 NC_005342.2 + 47689 1.07 0.001702
Target:  5'- cAUCAUUCCGCAGACGUCGACCGUGACc -3'
miRNA:   3'- -UAGUAAGGCGUCUGCAGCUGGCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.