miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26023 5' -58.2 NC_005342.2 + 18560 0.65 0.560122
Target:  5'- gGCGCGGCGgcgaauCCGAacccgUUCGUgcaacaaacgaccgGCGCGGCa -3'
miRNA:   3'- -CGUGCCGU------GGCUg----AAGCG--------------CGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 33123 0.66 0.55269
Target:  5'- -uGCGGCGCggCGACUgCGCGC-CGAa- -3'
miRNA:   3'- cgUGCCGUG--GCUGAaGCGCGcGCUga -5'
26023 5' -58.2 NC_005342.2 + 131 0.66 0.55269
Target:  5'- gGCGCGaGCACaCGAUcggCGCcugGCGCGAg- -3'
miRNA:   3'- -CGUGC-CGUG-GCUGaa-GCG---CGCGCUga -5'
26023 5' -58.2 NC_005342.2 + 2836 0.66 0.55269
Target:  5'- uCGCGGCGuuugcgaaCGACgUCGCG-GCGGCg -3'
miRNA:   3'- cGUGCCGUg-------GCUGaAGCGCgCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 27515 0.66 0.55269
Target:  5'- --cCGGCGCaGGCUUCGCGcCGCcGAa- -3'
miRNA:   3'- cguGCCGUGgCUGAAGCGC-GCG-CUga -5'
26023 5' -58.2 NC_005342.2 + 43726 0.66 0.55269
Target:  5'- ---gGGCGCaCGAa--CGUGCGCGGCa -3'
miRNA:   3'- cgugCCGUG-GCUgaaGCGCGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 30905 0.66 0.55269
Target:  5'- gGCcCGGUucGCCGAUguucCG-GCGCGGCUg -3'
miRNA:   3'- -CGuGCCG--UGGCUGaa--GCgCGCGCUGA- -5'
26023 5' -58.2 NC_005342.2 + 45364 0.66 0.55269
Target:  5'- cGCGCGGU--CGGCcugUCGCGCaauuggGCGACc -3'
miRNA:   3'- -CGUGCCGugGCUGa--AGCGCG------CGCUGa -5'
26023 5' -58.2 NC_005342.2 + 32160 0.66 0.542126
Target:  5'- cGUAcuCGGCGCC--CUUCaGCGCcGCGACg -3'
miRNA:   3'- -CGU--GCCGUGGcuGAAG-CGCG-CGCUGa -5'
26023 5' -58.2 NC_005342.2 + 7224 0.66 0.542126
Target:  5'- uCGCGGCAacgcCCGACgauuagaCGCcgaucaucuGCGCGACg -3'
miRNA:   3'- cGUGCCGU----GGCUGaa-----GCG---------CGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 41929 0.66 0.542126
Target:  5'- -uGCGGC-UCGACUUCGacCGCaCGACg -3'
miRNA:   3'- cgUGCCGuGGCUGAAGC--GCGcGCUGa -5'
26023 5' -58.2 NC_005342.2 + 47463 0.66 0.542126
Target:  5'- uCACGcuCGCCGGCacgUCGCGCGCcguGGCc -3'
miRNA:   3'- cGUGCc-GUGGCUGa--AGCGCGCG---CUGa -5'
26023 5' -58.2 NC_005342.2 + 7192 0.66 0.542126
Target:  5'- -gGCGGCGCgaaacguguCGACgaUCGUGCGCGcCg -3'
miRNA:   3'- cgUGCCGUG---------GCUGa-AGCGCGCGCuGa -5'
26023 5' -58.2 NC_005342.2 + 36065 0.66 0.542126
Target:  5'- gGCGCGcGCGCCG-CUgcgcaugcCGgGCcGCGACg -3'
miRNA:   3'- -CGUGC-CGUGGCuGAa-------GCgCG-CGCUGa -5'
26023 5' -58.2 NC_005342.2 + 43866 0.66 0.541073
Target:  5'- cUACGGCAaauUCGACgaccugUCGCGCccgcucggcaaggGCGGCg -3'
miRNA:   3'- cGUGCCGU---GGCUGa-----AGCGCG-------------CGCUGa -5'
26023 5' -58.2 NC_005342.2 + 36331 0.66 0.541073
Target:  5'- uGCGCgacuacuGGCAgcgcuacuUCGACacgUUCGCGCGCGAa- -3'
miRNA:   3'- -CGUG-------CCGU--------GGCUG---AAGCGCGCGCUga -5'
26023 5' -58.2 NC_005342.2 + 36823 0.66 0.532676
Target:  5'- aGguCGGCAUCGACUUCGgagauaaguucggcaGCGUG-CUa -3'
miRNA:   3'- -CguGCCGUGGCUGAAGCg--------------CGCGCuGA- -5'
26023 5' -58.2 NC_005342.2 + 43238 0.66 0.531629
Target:  5'- --uCGGUgaagGCCGGCgugcUCGCggGCGCGACg -3'
miRNA:   3'- cguGCCG----UGGCUGa---AGCG--CGCGCUGa -5'
26023 5' -58.2 NC_005342.2 + 5365 0.66 0.531629
Target:  5'- aGC-CGGCGuuGACcugUUCGCGUucuucugccaucGCGGCa -3'
miRNA:   3'- -CGuGCCGUggCUG---AAGCGCG------------CGCUGa -5'
26023 5' -58.2 NC_005342.2 + 9546 0.66 0.531629
Target:  5'- -gGCGGCugCGGgaaUUUCaGCGCgGCGGCc -3'
miRNA:   3'- cgUGCCGugGCU---GAAG-CGCG-CGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.