miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26038 3' -57.5 NC_005342.2 + 34467 0.66 0.600585
Target:  5'- --aGCaCGUCgGACGGCGACcAGCugaaGCa -3'
miRNA:   3'- ugaUGaGCAGgCUGCCGCUG-UCGc---CG- -5'
26038 3' -57.5 NC_005342.2 + 40429 0.66 0.600585
Target:  5'- cGCga-UCGUcaCCGGCGGCGGCAaGUcGCu -3'
miRNA:   3'- -UGaugAGCA--GGCUGCCGCUGU-CGcCG- -5'
26038 3' -57.5 NC_005342.2 + 13791 0.66 0.600585
Target:  5'- --cGCgaggCGcagCGACGGCGACGGUucGGCg -3'
miRNA:   3'- ugaUGa---GCag-GCUGCCGCUGUCG--CCG- -5'
26038 3' -57.5 NC_005342.2 + 24689 0.66 0.600585
Target:  5'- aGCUGCaugcCGaUCCGcGCGcGCGACAGCGu- -3'
miRNA:   3'- -UGAUGa---GC-AGGC-UGC-CGCUGUCGCcg -5'
26038 3' -57.5 NC_005342.2 + 29098 0.66 0.600585
Target:  5'- aGCgGCUCGU-UGcCGGCGaaGCAGaCGGCg -3'
miRNA:   3'- -UGaUGAGCAgGCuGCCGC--UGUC-GCCG- -5'
26038 3' -57.5 NC_005342.2 + 19702 0.66 0.600585
Target:  5'- uGCUGCUCG--CGugcuCGGCGcUGGUGGCg -3'
miRNA:   3'- -UGAUGAGCagGCu---GCCGCuGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 27545 0.66 0.600585
Target:  5'- ---uUUCGaa-GGCGGUGACgAGCGGCg -3'
miRNA:   3'- ugauGAGCaggCUGCCGCUG-UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 23746 0.66 0.600585
Target:  5'- --cGC-CGUUUuACGGCGGCcaGGCGGCc -3'
miRNA:   3'- ugaUGaGCAGGcUGCCGCUG--UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 705 0.66 0.600585
Target:  5'- uACUGgUCGcgCCGGcCGGCGccucguucaGC-GCGGCa -3'
miRNA:   3'- -UGAUgAGCa-GGCU-GCCGC---------UGuCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 46540 0.66 0.594101
Target:  5'- aGCUGCagcaagaccucacgaUCaccaaUCCGGCGGuCGGCAaGCGGUa -3'
miRNA:   3'- -UGAUG---------------AGc----AGGCUGCC-GCUGU-CGCCG- -5'
26038 3' -57.5 NC_005342.2 + 45049 0.66 0.589784
Target:  5'- gGCUACagCGgcacgCUGACGGUuacGACGGCcGCg -3'
miRNA:   3'- -UGAUGa-GCa----GGCUGCCG---CUGUCGcCG- -5'
26038 3' -57.5 NC_005342.2 + 22047 0.66 0.589784
Target:  5'- aGCUACgugcaagCG-CagGGCGGCGAagcGCGGCg -3'
miRNA:   3'- -UGAUGa------GCaGg-CUGCCGCUgu-CGCCG- -5'
26038 3' -57.5 NC_005342.2 + 22932 0.66 0.589784
Target:  5'- aACUACcCGauUCCGGCGcacucguuGCGAUcagcgugacgGGCGGCg -3'
miRNA:   3'- -UGAUGaGC--AGGCUGC--------CGCUG----------UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 30859 0.66 0.589784
Target:  5'- cGCUGCU-GcUCGGCGGUGACGuguuCGGCu -3'
miRNA:   3'- -UGAUGAgCaGGCUGCCGCUGUc---GCCG- -5'
26038 3' -57.5 NC_005342.2 + 30403 0.66 0.58655
Target:  5'- cGCcGC-CG-CCGGCGGCGGCaacuucguccuggaAGCuGGCg -3'
miRNA:   3'- -UGaUGaGCaGGCUGCCGCUG--------------UCG-CCG- -5'
26038 3' -57.5 NC_005342.2 + 30802 0.66 0.579018
Target:  5'- cCUGCagGUUCGGCgccuGGCccguCAGCGGCg -3'
miRNA:   3'- uGAUGagCAGGCUG----CCGcu--GUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 18398 0.66 0.568294
Target:  5'- -gUGC-CGUCCGaaGCGcaacgccucGCGAuCGGCGGCg -3'
miRNA:   3'- ugAUGaGCAGGC--UGC---------CGCU-GUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 21073 0.66 0.568294
Target:  5'- -gUGCUCGaUCCGGCagaaGGUGACAuCGGg -3'
miRNA:   3'- ugAUGAGC-AGGCUG----CCGCUGUcGCCg -5'
26038 3' -57.5 NC_005342.2 + 47269 0.66 0.567224
Target:  5'- ---cCUCG-CC-ACGGCGcucgcggGCGGCGGCa -3'
miRNA:   3'- ugauGAGCaGGcUGCCGC-------UGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 33093 0.66 0.55762
Target:  5'- uGCUGCcCGaUCgCGuagaACGGCGAUgccuGCGGCg -3'
miRNA:   3'- -UGAUGaGC-AG-GC----UGCCGCUGu---CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.