miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2617 3' -50.8 NC_001488.1 + 1284 0.66 0.418791
Target:  5'- aGCAGGaGGUcagcuccucugcucUUG---GCAGCCCCcaguucaugcagACCCu -3'
miRNA:   3'- -UGUCC-CCA--------------AAUuuuUGUCGGGG------------UGGG- -5'
2617 3' -50.8 NC_001488.1 + 1595 0.68 0.29199
Target:  5'- gGCAGGGuGga-GAAAGCAGCCa-GCCa -3'
miRNA:   3'- -UGUCCC-CaaaUUUUUGUCGGggUGGg -5'
2617 3' -50.8 NC_001488.1 + 442 0.68 0.29199
Target:  5'- uCAGGaGGUgccgaggccgGGAGACGGUCCCACg- -3'
miRNA:   3'- uGUCC-CCAaa--------UUUUUGUCGGGGUGgg -5'
2617 3' -50.8 NC_001488.1 + 8623 0.68 0.29199
Target:  5'- uCAGGaGGUgccgaggccgGGAGACGGUCCCACg- -3'
miRNA:   3'- uGUCC-CCAaa--------UUUUUGUCGGGGUGgg -5'
2617 3' -50.8 NC_001488.1 + 5091 0.69 0.261968
Target:  5'- cCGGGGGgagccgucuaugGAGAGCAaggcuGCCCCGgCCg -3'
miRNA:   3'- uGUCCCCaaa---------UUUUUGU-----CGGGGUgGG- -5'
2617 3' -50.8 NC_001488.1 + 1492 0.7 0.214853
Target:  5'- gGCAGGGccccUAAGAauGCAGgcuaauaaCCCCGCCCa -3'
miRNA:   3'- -UGUCCCcaa-AUUUU--UGUC--------GGGGUGGG- -5'
2617 3' -50.8 NC_001488.1 + 2027 0.75 0.088368
Target:  5'- -aGGGGGUUUGAGuugugGGCAGUCCCuuuUCCa -3'
miRNA:   3'- ugUCCCCAAAUUU-----UUGUCGGGGu--GGG- -5'
2617 3' -50.8 NC_001488.1 + 2952 1.12 0.000119
Target:  5'- cACAGGGGUUUAAAAACAGCCCCACCCu -3'
miRNA:   3'- -UGUCCCCAAAUUUUUGUCGGGGUGGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.