miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2625 5' -55.6 NC_001491.2 + 34365 0.66 0.912512
Target:  5'- -cCCCAG-GGGCAA-GAGCGgCaagCGGc -3'
miRNA:   3'- auGGGUCaCCCGUUaUUCGCgGa--GCC- -5'
2625 5' -55.6 NC_001491.2 + 8661 0.66 0.912512
Target:  5'- gGCCCGGgggccagGGGCGuucuGCGCCcCGc -3'
miRNA:   3'- aUGGGUCa------CCCGUuauuCGCGGaGCc -5'
2625 5' -55.6 NC_001491.2 + 2845 0.66 0.900039
Target:  5'- gGCuCCAG-GGGCucgGAGCGCCg--- -3'
miRNA:   3'- aUG-GGUCaCCCGuuaUUCGCGGagcc -5'
2625 5' -55.6 NC_001491.2 + 56507 0.66 0.886617
Target:  5'- gUugCC-GUGGGCGuguuuguGGC-CCUCGGa -3'
miRNA:   3'- -AugGGuCACCCGUuau----UCGcGGAGCC- -5'
2625 5' -55.6 NC_001491.2 + 149936 0.67 0.87956
Target:  5'- -nCCCAGUGGGCGuggccucccaGUGGGCgugGCCUa-- -3'
miRNA:   3'- auGGGUCACCCGU----------UAUUCG---CGGAgcc -5'
2625 5' -55.6 NC_001491.2 + 1459 0.67 0.857058
Target:  5'- aGCCuCGGUgauGGGCAGcaccagGGGCucgGCCUCGGc -3'
miRNA:   3'- aUGG-GUCA---CCCGUUa-----UUCG---CGGAGCC- -5'
2625 5' -55.6 NC_001491.2 + 4259 0.68 0.832688
Target:  5'- --aCCGGUacugGGGCcu---GCGCCUCGGc -3'
miRNA:   3'- augGGUCA----CCCGuuauuCGCGGAGCC- -5'
2625 5' -55.6 NC_001491.2 + 12543 0.68 0.797624
Target:  5'- gACCgAGcGGGCGcggGAGCgcgcgagcgccGCCUCGGg -3'
miRNA:   3'- aUGGgUCaCCCGUua-UUCG-----------CGGAGCC- -5'
2625 5' -55.6 NC_001491.2 + 4437 0.69 0.788455
Target:  5'- cGCCCGG-GGcGCAcgAAGCcGCCgcCGGg -3'
miRNA:   3'- aUGGGUCaCC-CGUuaUUCG-CGGa-GCC- -5'
2625 5' -55.6 NC_001491.2 + 34770 0.69 0.760119
Target:  5'- gGCCCGGgacGGCGc---GCGCUUCGGg -3'
miRNA:   3'- aUGGGUCac-CCGUuauuCGCGGAGCC- -5'
2625 5' -55.6 NC_001491.2 + 149902 0.71 0.649251
Target:  5'- -uCCCAGUGGGCGuggccucccaGUGGGCgugGCCUCc- -3'
miRNA:   3'- auGGGUCACCCGU----------UAUUCG---CGGAGcc -5'
2625 5' -55.6 NC_001491.2 + 149851 0.71 0.649251
Target:  5'- -uCCCAGUGGGCGuggccucccaGUGGGCgugGCCUCc- -3'
miRNA:   3'- auGGGUCACCCGU----------UAUUCG---CGGAGcc -5'
2625 5' -55.6 NC_001491.2 + 149800 0.71 0.649251
Target:  5'- -uCCCAGUGGGCGuggccucccaGUGGGCgugGCCUCc- -3'
miRNA:   3'- auGGGUCACCCGU----------UAUUCG---CGGAGcc -5'
2625 5' -55.6 NC_001491.2 + 149749 0.71 0.649251
Target:  5'- -uCCCAGUGGGCGuggccucccaGUGGGCgugGCCUCc- -3'
miRNA:   3'- auGGGUCACCCGU----------UAUUCG---CGGAGcc -5'
2625 5' -55.6 NC_001491.2 + 115801 0.72 0.57702
Target:  5'- aGCCaCGGccgucgcaUGGGCAGaGAGCGCCcCGGa -3'
miRNA:   3'- aUGG-GUC--------ACCCGUUaUUCGCGGaGCC- -5'
2625 5' -55.6 NC_001491.2 + 85122 0.76 0.404639
Target:  5'- cAUCCAcgGGGCGGUGGGCGUgUCGGg -3'
miRNA:   3'- aUGGGUcaCCCGUUAUUCGCGgAGCC- -5'
2625 5' -55.6 NC_001491.2 + 3522 0.76 0.370859
Target:  5'- aGCCCGGccGGGUugGAgcacAGCGCCUCGGg -3'
miRNA:   3'- aUGGGUCa-CCCG--UUau--UCGCGGAGCC- -5'
2625 5' -55.6 NC_001491.2 + 12479 0.8 0.220866
Target:  5'- cGCCCGGcGGGCGGcGGGCGCCcgCGGg -3'
miRNA:   3'- aUGGGUCaCCCGUUaUUCGCGGa-GCC- -5'
2625 5' -55.6 NC_001491.2 + 147390 1.1 0.002543
Target:  5'- gUACCCAGUGGGCAAUAAGCGCCUCGGg -3'
miRNA:   3'- -AUGGGUCACCCGUUAUUCGCGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.