miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26264 3' -54.4 NC_005345.2 + 1111 0.66 0.725388
Target:  5'- cGCcGGA-CGAGcACAGC-CGCGuAGCc -3'
miRNA:   3'- cCGuCCUaGCUCaUGUCGaGCGC-UCG- -5'
26264 3' -54.4 NC_005345.2 + 1940 0.68 0.603149
Target:  5'- gGGCGGGugcgaaugcacguGUcCGGGUcCGGCUC-CGGGCa -3'
miRNA:   3'- -CCGUCC-------------UA-GCUCAuGUCGAGcGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 2353 0.67 0.667523
Target:  5'- uGGCGGGAUCGcgcaACGGCgcgugaccuccccgUCGCGcGCc -3'
miRNA:   3'- -CCGUCCUAGCuca-UGUCG--------------AGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 2777 0.7 0.506539
Target:  5'- cGGCGGccUCG-GUACGGCUUGUcGGCg -3'
miRNA:   3'- -CCGUCcuAGCuCAUGUCGAGCGcUCG- -5'
26264 3' -54.4 NC_005345.2 + 3423 0.7 0.496057
Target:  5'- cGGCGGGcgCGGcGgcggGCGGCgaUGCGGGCc -3'
miRNA:   3'- -CCGUCCuaGCU-Ca---UGUCGa-GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 3810 0.76 0.217573
Target:  5'- gGGCA-GAUCGAGgccgcgcaGCAGCUCGCcGGCu -3'
miRNA:   3'- -CCGUcCUAGCUCa-------UGUCGAGCGcUCG- -5'
26264 3' -54.4 NC_005345.2 + 4123 0.68 0.604257
Target:  5'- cGGUuGGcguUCGAGcgGCuGCUCGCG-GCg -3'
miRNA:   3'- -CCGuCCu--AGCUCa-UGuCGAGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 4256 0.66 0.725388
Target:  5'- aGCGGGA-CGAGgccacguugcUGCGcCUCGCGAcGCg -3'
miRNA:   3'- cCGUCCUaGCUC----------AUGUcGAGCGCU-CG- -5'
26264 3' -54.4 NC_005345.2 + 4464 0.71 0.425739
Target:  5'- cGGCGGGGgcccggCGGccGUGucCGGCUCGaCGAGCc -3'
miRNA:   3'- -CCGUCCUa-----GCU--CAU--GUCGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 4814 0.67 0.703771
Target:  5'- cGGCAGcucggcGAuuUCGGGUACGcCUCGaUGGGCg -3'
miRNA:   3'- -CCGUC------CU--AGCUCAUGUcGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 5076 0.67 0.69285
Target:  5'- cGGUaaGGcGAUCGAGgaguuCcGC-CGCGAGCg -3'
miRNA:   3'- -CCG--UC-CUAGCUCau---GuCGaGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 5207 0.66 0.757074
Target:  5'- cGGCAcGGcCGG--GCAGCUCGCG-GCc -3'
miRNA:   3'- -CCGUcCUaGCUcaUGUCGAGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 5279 0.75 0.254808
Target:  5'- gGGCucgGGGGUCGGGUACuGCgggggGCGGGCc -3'
miRNA:   3'- -CCG---UCCUAGCUCAUGuCGag---CGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 5569 0.71 0.435426
Target:  5'- gGGUGGGAggCGGGU-CAGUUgGCGAGg -3'
miRNA:   3'- -CCGUCCUa-GCUCAuGUCGAgCGCUCg -5'
26264 3' -54.4 NC_005345.2 + 5663 0.68 0.64868
Target:  5'- uGGCGGcGAUCGAGgucACcuguGCgUCgGUGAGCg -3'
miRNA:   3'- -CCGUC-CUAGCUCa--UGu---CG-AG-CGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 6468 0.67 0.703771
Target:  5'- aGCGGGccgcCGAgcuGUACGGCg-GCGAGCc -3'
miRNA:   3'- cCGUCCua--GCU---CAUGUCGagCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 6531 0.79 0.156966
Target:  5'- aGCAGuuUCGGGUGaucaccgaGGCUCGCGAGCu -3'
miRNA:   3'- cCGUCcuAGCUCAUg-------UCGAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 6544 0.71 0.465228
Target:  5'- gGGCGGGGcggUGGGggACguGGCUaCGCGGGCg -3'
miRNA:   3'- -CCGUCCUa--GCUCa-UG--UCGA-GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 6835 0.7 0.475397
Target:  5'- gGGCGGGAUCGAc-AUGGUccUCGCG-GCg -3'
miRNA:   3'- -CCGUCCUAGCUcaUGUCG--AGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 8070 0.68 0.603149
Target:  5'- aGCcuGGUCGuGUACAGCggacgacagcuguUCGgCGAGCa -3'
miRNA:   3'- cCGucCUAGCuCAUGUCG-------------AGC-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.