miRNA display CGI


Results 21 - 40 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26264 3' -54.4 NC_005345.2 + 33471 0.66 0.71354
Target:  5'- cGGCA-GAUCGgccggccgacGGUGCAGgUCggcgcggagaucgGCGAGCa -3'
miRNA:   3'- -CCGUcCUAGC----------UCAUGUCgAG-------------CGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 23679 0.67 0.703771
Target:  5'- cGGCcGG-UCGGGcggGCcgAGCgcaCGCGAGCg -3'
miRNA:   3'- -CCGuCCuAGCUCa--UG--UCGa--GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 34136 0.67 0.703771
Target:  5'- uGGcCAGaGAUCGAGUggcGCGGCg-GCG-GCc -3'
miRNA:   3'- -CC-GUC-CUAGCUCA---UGUCGagCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 4814 0.67 0.703771
Target:  5'- cGGCAGcucggcGAuuUCGGGUACGcCUCGaUGGGCg -3'
miRNA:   3'- -CCGUC------CU--AGCUCAUGUcGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 6468 0.67 0.703771
Target:  5'- aGCGGGccgcCGAgcuGUACGGCg-GCGAGCc -3'
miRNA:   3'- cCGUCCua--GCU---CAUGUCGagCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 34687 0.67 0.703771
Target:  5'- gGGCgucgGGGAUgccgagCGAGU-CGGCgaGCGAGCa -3'
miRNA:   3'- -CCG----UCCUA------GCUCAuGUCGagCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 24645 0.67 0.703771
Target:  5'- gGGCcGGGUUG-GUcgccgaucgaGCGGCUCaCGGGCg -3'
miRNA:   3'- -CCGuCCUAGCuCA----------UGUCGAGcGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 33037 0.67 0.703771
Target:  5'- cGCGGGGugcgguccggcUCGAcGUugGGCUCGUaGGUg -3'
miRNA:   3'- cCGUCCU-----------AGCU-CAugUCGAGCGcUCG- -5'
26264 3' -54.4 NC_005345.2 + 40037 0.67 0.69285
Target:  5'- cGGCAGaGUCGA--GCAGCUCgaccacacaGCGGGg -3'
miRNA:   3'- -CCGUCcUAGCUcaUGUCGAG---------CGCUCg -5'
26264 3' -54.4 NC_005345.2 + 35904 0.67 0.69285
Target:  5'- cGGCGGcaucGUCGGGU--GGCUCGgGAcGCg -3'
miRNA:   3'- -CCGUCc---UAGCUCAugUCGAGCgCU-CG- -5'
26264 3' -54.4 NC_005345.2 + 30679 0.67 0.69285
Target:  5'- gGGCAuGGGUCGAcgauccGgcCGGCU-GCGGGUg -3'
miRNA:   3'- -CCGU-CCUAGCU------CauGUCGAgCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 9590 0.67 0.69285
Target:  5'- uGCGGGGcgugCGAgGUGCAGa--GCGAGUg -3'
miRNA:   3'- cCGUCCUa---GCU-CAUGUCgagCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 5076 0.67 0.69285
Target:  5'- cGGUaaGGcGAUCGAGgaguuCcGC-CGCGAGCg -3'
miRNA:   3'- -CCG--UC-CUAGCUCau---GuCGaGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 31949 0.67 0.69285
Target:  5'- uGCGGGugCGGGUGCGGg-UGCGGGUg -3'
miRNA:   3'- cCGUCCuaGCUCAUGUCgaGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 31207 0.67 0.681869
Target:  5'- cGGCGGGugcgcaccCGGGUGCGGC-CGgGuGUa -3'
miRNA:   3'- -CCGUCCua------GCUCAUGUCGaGCgCuCG- -5'
26264 3' -54.4 NC_005345.2 + 15990 0.67 0.670839
Target:  5'- cGCGGcGUCGAGguuCA--UCGCGAGCa -3'
miRNA:   3'- cCGUCcUAGCUCau-GUcgAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 2353 0.67 0.667523
Target:  5'- uGGCGGGAUCGcgcaACGGCgcgugaccuccccgUCGCGcGCc -3'
miRNA:   3'- -CCGUCCUAGCuca-UGUCG--------------AGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 38454 0.67 0.659773
Target:  5'- cGCAGGAcaggcCGGGcACAGC--GCGGGCa -3'
miRNA:   3'- cCGUCCUa----GCUCaUGUCGagCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 8269 0.67 0.659773
Target:  5'- cGCGGGGUucaCGAGUGCccuuaGGUUCGcCGuGCu -3'
miRNA:   3'- cCGUCCUA---GCUCAUG-----UCGAGC-GCuCG- -5'
26264 3' -54.4 NC_005345.2 + 44226 0.67 0.659773
Target:  5'- cGGCcGGAgCGcacGUgcggcugccgcaGCAGCUCGgCGAGCa -3'
miRNA:   3'- -CCGuCCUaGCu--CA------------UGUCGAGC-GCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.