miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 3' -60.8 NC_005345.2 + 40487 1.08 0.000234
Target:  5'- cGCGGCGAGCAGCAGCACGGCGAGGUAg -3'
miRNA:   3'- -CGCCGCUCGUCGUCGUGCCGCUCCAU- -5'
26268 3' -60.8 NC_005345.2 + 8317 0.8 0.035223
Target:  5'- gGCGGCGcGCAGCAGCAgcguucCGGCGGcGGUGc -3'
miRNA:   3'- -CGCCGCuCGUCGUCGU------GCCGCU-CCAU- -5'
26268 3' -60.8 NC_005345.2 + 48895 0.77 0.064367
Target:  5'- gGCGGCGAGguGCGG-GCGGCGAuGGc- -3'
miRNA:   3'- -CGCCGCUCguCGUCgUGCCGCU-CCau -5'
26268 3' -60.8 NC_005345.2 + 3421 0.77 0.064367
Target:  5'- gGCGGCGGGCgcGGCGGCggGCGGCGAugcGGg- -3'
miRNA:   3'- -CGCCGCUCG--UCGUCG--UGCCGCU---CCau -5'
26268 3' -60.8 NC_005345.2 + 10597 0.76 0.068134
Target:  5'- aGCGGUggcacGAGCAGCGGCGCGGCc-GGUc -3'
miRNA:   3'- -CGCCG-----CUCGUCGUCGUGCCGcuCCAu -5'
26268 3' -60.8 NC_005345.2 + 15369 0.76 0.076314
Target:  5'- gGCGGCGA-CGGCAGCGCGG--GGGUAc -3'
miRNA:   3'- -CGCCGCUcGUCGUCGUGCCgcUCCAU- -5'
26268 3' -60.8 NC_005345.2 + 33530 0.75 0.08762
Target:  5'- gGCGGCGAGCcGCGGCAugcugacgacgcuCGGCGcAGGc- -3'
miRNA:   3'- -CGCCGCUCGuCGUCGU-------------GCCGC-UCCau -5'
26268 3' -60.8 NC_005345.2 + 22163 0.75 0.092939
Target:  5'- uGUGGCGAGCAGC-GC-CGGCGcuGGGa- -3'
miRNA:   3'- -CGCCGCUCGUCGuCGuGCCGC--UCCau -5'
26268 3' -60.8 NC_005345.2 + 8740 0.75 0.095578
Target:  5'- gGUGGCGAGCGcgacgacuGCAGCAuCGGgGAGGc- -3'
miRNA:   3'- -CGCCGCUCGU--------CGUCGU-GCCgCUCCau -5'
26268 3' -60.8 NC_005345.2 + 43463 0.75 0.095578
Target:  5'- gGCGGCGAGUucGCGGCGCaGCGcGGUc -3'
miRNA:   3'- -CGCCGCUCGu-CGUCGUGcCGCuCCAu -5'
26268 3' -60.8 NC_005345.2 + 3877 0.74 0.098288
Target:  5'- aCGcCGAGUgccuGCAGCGCGGCGAGGg- -3'
miRNA:   3'- cGCcGCUCGu---CGUCGUGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 46997 0.74 0.106563
Target:  5'- -aGGUGAGUaucgcccGGCuGCACGGCGAGGc- -3'
miRNA:   3'- cgCCGCUCG-------UCGuCGUGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 14928 0.74 0.10686
Target:  5'- cGCGGCGGcuGCAGCgGGCgGCGGCGaAGGa- -3'
miRNA:   3'- -CGCCGCU--CGUCG-UCG-UGCCGC-UCCau -5'
26268 3' -60.8 NC_005345.2 + 28401 0.74 0.10686
Target:  5'- cGCGGCG-GCAGCGGCA-GGC-AGGg- -3'
miRNA:   3'- -CGCCGCuCGUCGUCGUgCCGcUCCau -5'
26268 3' -60.8 NC_005345.2 + 13192 0.74 0.112959
Target:  5'- cCGGCccGAGCGGCAGCccgcGCGGCGAGc-- -3'
miRNA:   3'- cGCCG--CUCGUCGUCG----UGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 39116 0.73 0.116129
Target:  5'- uCGGCGAGCAgcccgcaugcGCAGUugaaaucggccGCGGCGAGGc- -3'
miRNA:   3'- cGCCGCUCGU----------CGUCG-----------UGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 22346 0.73 0.119383
Target:  5'- uGCGGCGAGCAGCGccuGCgacGCGGCGccGGc- -3'
miRNA:   3'- -CGCCGCUCGUCGU---CG---UGCCGCu-CCau -5'
26268 3' -60.8 NC_005345.2 + 44241 0.73 0.119383
Target:  5'- uGCGGCugccGCAGCAGCuCGGCGAGc-- -3'
miRNA:   3'- -CGCCGcu--CGUCGUCGuGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 15858 0.73 0.12272
Target:  5'- cGCGGUGGGCgAGCAGCuCGGCGcuuGUGa -3'
miRNA:   3'- -CGCCGCUCG-UCGUCGuGCCGCuc-CAU- -5'
26268 3' -60.8 NC_005345.2 + 41092 0.73 0.13326
Target:  5'- gGCGGCGAGCuugaucuGCAGCuCGugcagcugcGCGAGGUc -3'
miRNA:   3'- -CGCCGCUCGu------CGUCGuGC---------CGCUCCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.