miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 3' -60.8 NC_005345.2 + 30532 0.67 0.338099
Target:  5'- aGCGGacgauCGGGCAGUAuGCcgagacccuCGGCGAGGa- -3'
miRNA:   3'- -CGCC-----GCUCGUCGU-CGu--------GCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 23810 0.67 0.338099
Target:  5'- gGCGGCGA-CAGCAGCGucgaucuuguuCGGgcuguCGGGGUu -3'
miRNA:   3'- -CGCCGCUcGUCGUCGU-----------GCC-----GCUCCAu -5'
26268 3' -60.8 NC_005345.2 + 32989 0.67 0.338099
Target:  5'- uCGGCGcaGGCGGcCGGggUGGCGGGGg- -3'
miRNA:   3'- cGCCGC--UCGUC-GUCguGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 47858 0.67 0.338099
Target:  5'- -aGGUGGGCAugGGCcCGGCGAcGGUGa -3'
miRNA:   3'- cgCCGCUCGUcgUCGuGCCGCU-CCAU- -5'
26268 3' -60.8 NC_005345.2 + 34612 0.67 0.338099
Target:  5'- -gGGCGAGgAGcCAGCguGCGGCGgucGGGg- -3'
miRNA:   3'- cgCCGCUCgUC-GUCG--UGCCGC---UCCau -5'
26268 3' -60.8 NC_005345.2 + 30675 0.67 0.337296
Target:  5'- cGCGGCGAGCAucuucgggucGCGGgACccgguccaccacgGGCGcAGGUu -3'
miRNA:   3'- -CGCCGCUCGU----------CGUCgUG-------------CCGC-UCCAu -5'
26268 3' -60.8 NC_005345.2 + 48574 0.67 0.337296
Target:  5'- uGCGGgcgccgaUGAGCucGCGGCG-GGCGAGGa- -3'
miRNA:   3'- -CGCC-------GCUCGu-CGUCGUgCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 35930 0.67 0.330129
Target:  5'- cGCGGCGAagaaggucgGCGGCGucGuCAUGaGCGGGGUu -3'
miRNA:   3'- -CGCCGCU---------CGUCGU--C-GUGC-CGCUCCAu -5'
26268 3' -60.8 NC_005345.2 + 38997 0.67 0.325414
Target:  5'- uGCGGCGGGCGcuccGCAGaGCGGCcgccgccuguaccucGGGGa- -3'
miRNA:   3'- -CGCCGCUCGU----CGUCgUGCCG---------------CUCCau -5'
26268 3' -60.8 NC_005345.2 + 5328 0.67 0.322299
Target:  5'- cCGGCGAagcGCuGCAGUGCGGUGccGUGg -3'
miRNA:   3'- cGCCGCU---CGuCGUCGUGCCGCucCAU- -5'
26268 3' -60.8 NC_005345.2 + 43112 0.67 0.317668
Target:  5'- cGCGGUGAGCuGCAGUggcugcucgucguacACGGUGGugucGGg- -3'
miRNA:   3'- -CGCCGCUCGuCGUCG---------------UGCCGCU----CCau -5'
26268 3' -60.8 NC_005345.2 + 4121 0.67 0.314608
Target:  5'- aGCGGUuggcguucGAGCGGCuGCucGCGGCGcucgucgagcGGGUGu -3'
miRNA:   3'- -CGCCG--------CUCGUCGuCG--UGCCGC----------UCCAU- -5'
26268 3' -60.8 NC_005345.2 + 15547 0.67 0.314608
Target:  5'- cGCGGCgGAGaacaCGGCGGCAcCGGCGAc--- -3'
miRNA:   3'- -CGCCG-CUC----GUCGUCGU-GCCGCUccau -5'
26268 3' -60.8 NC_005345.2 + 39596 0.67 0.314608
Target:  5'- cGCGGggacuaCGAGgGGCAGCuCGGCGuguGGa- -3'
miRNA:   3'- -CGCC------GCUCgUCGUCGuGCCGCu--CCau -5'
26268 3' -60.8 NC_005345.2 + 25099 0.67 0.307057
Target:  5'- aGCGGCGuucgGGCcGCGGCugcaGGUGaAGGUGa -3'
miRNA:   3'- -CGCCGC----UCGuCGUCGug--CCGC-UCCAU- -5'
26268 3' -60.8 NC_005345.2 + 37423 0.67 0.307057
Target:  5'- uGCGGCGAGuUGGUA-CGCGGCGGcGGc- -3'
miRNA:   3'- -CGCCGCUC-GUCGUcGUGCCGCU-CCau -5'
26268 3' -60.8 NC_005345.2 + 31705 0.67 0.307057
Target:  5'- uGCGGaCGGuccuCGGguGCGCGGaCGGGGUu -3'
miRNA:   3'- -CGCC-GCUc---GUCguCGUGCC-GCUCCAu -5'
26268 3' -60.8 NC_005345.2 + 34921 0.67 0.299646
Target:  5'- -gGGCGuGC-GCAGggcgGCGGCGAGGg- -3'
miRNA:   3'- cgCCGCuCGuCGUCg---UGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 13267 0.67 0.299646
Target:  5'- cCGGCGAGCAGCucguCGGCGAc--- -3'
miRNA:   3'- cGCCGCUCGUCGucguGCCGCUccau -5'
26268 3' -60.8 NC_005345.2 + 34756 0.67 0.297449
Target:  5'- cGCGGCG-GCGGCGgugacGCGCGGCuacgcgaucgugcaGGGGc- -3'
miRNA:   3'- -CGCCGCuCGUCGU-----CGUGCCG--------------CUCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.