miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26269 3' -56.7 NC_005345.2 + 3854 0.67 0.547105
Target:  5'- -gGACCCGGCUGAUc-GGCGUcgGCg-- -3'
miRNA:   3'- agUUGGGCCGGCUGuaCCGCA--CGaac -5'
26269 3' -56.7 NC_005345.2 + 40279 0.68 0.473802
Target:  5'- aCGGCCCGGCCGugAUcGUGgGCc-- -3'
miRNA:   3'- aGUUGGGCCGGCugUAcCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 16861 0.66 0.568751
Target:  5'- gCAGCUgcaggcgcgguaCGGCCGAgCGUGGCG-GCg-- -3'
miRNA:   3'- aGUUGG------------GCCGGCU-GUACCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 7277 0.66 0.601587
Target:  5'- aCAGCCCGGaCGAUgacGGUGUGUa-- -3'
miRNA:   3'- aGUUGGGCCgGCUGua-CCGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 9325 0.67 0.522548
Target:  5'- gCGACCCGGgCGgcgaccagugcgacGCAUGGUG-GCUg- -3'
miRNA:   3'- aGUUGGGCCgGC--------------UGUACCGCaCGAac -5'
26269 3' -56.7 NC_005345.2 + 11191 0.66 0.590604
Target:  5'- gCAGCCUGGUCGACGccGGCcUGUg-- -3'
miRNA:   3'- aGUUGGGCCGGCUGUa-CCGcACGaac -5'
26269 3' -56.7 NC_005345.2 + 35338 0.66 0.579656
Target:  5'- aUCGGCgCGGCCGGC---GCGUGgaUGu -3'
miRNA:   3'- -AGUUGgGCCGGCUGuacCGCACgaAC- -5'
26269 3' -56.7 NC_005345.2 + 7629 0.75 0.175864
Target:  5'- cCGACCCGGCCcagaACAUcgaGGCGUGCg-- -3'
miRNA:   3'- aGUUGGGCCGGc---UGUA---CCGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 41073 0.75 0.180704
Target:  5'- gCAGCCCGGCCGccuGCucggcGGCGaGCUUGa -3'
miRNA:   3'- aGUUGGGCCGGC---UGua---CCGCaCGAAC- -5'
26269 3' -56.7 NC_005345.2 + 47824 0.66 0.612597
Target:  5'- gCGACCCGGCCGGCAaccagaaGCagaaaUGCUUu -3'
miRNA:   3'- aGUUGGGCCGGCUGUac-----CGc----ACGAAc -5'
26269 3' -56.7 NC_005345.2 + 21329 0.66 0.579656
Target:  5'- aCAGCUCGGUCGGguccucgccCGUGcGCG-GCUUGc -3'
miRNA:   3'- aGUUGGGCCGGCU---------GUAC-CGCaCGAAC- -5'
26269 3' -56.7 NC_005345.2 + 32988 0.67 0.53638
Target:  5'- cUCGGCgcaggCGGCCGGgGUGGCGgggGCg-- -3'
miRNA:   3'- -AGUUGg----GCCGGCUgUACCGCa--CGaac -5'
26269 3' -56.7 NC_005345.2 + 48874 0.77 0.12275
Target:  5'- cCAGCauucgCCGGCCGACGUGGCG-GCg-- -3'
miRNA:   3'- aGUUG-----GGCCGGCUGUACCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 6177 0.67 0.504673
Target:  5'- aCAcGCCCGGCCcgguuCGUGcGCGUGCc-- -3'
miRNA:   3'- aGU-UGGGCCGGcu---GUAC-CGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 40012 1.09 0.000557
Target:  5'- gUCAACCCGGCCGACAUGGCGUGCUUGg -3'
miRNA:   3'- -AGUUGGGCCGGCUGUACCGCACGAAC- -5'
26269 3' -56.7 NC_005345.2 + 22021 0.68 0.48399
Target:  5'- cUCGACgCCGGCCGGugccgcCGUGGCGccgaGCa-- -3'
miRNA:   3'- -AGUUG-GGCCGGCU------GUACCGCa---CGaac -5'
26269 3' -56.7 NC_005345.2 + 3623 0.69 0.40576
Target:  5'- aCGGCCCGcGCCG-CA-GGUGUGCc-- -3'
miRNA:   3'- aGUUGGGC-CGGCuGUaCCGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 48215 0.69 0.434181
Target:  5'- uUCAACCCggcGGCCGACcuggacauUGGCGagGCg-- -3'
miRNA:   3'- -AGUUGGG---CCGGCUGu-------ACCGCa-CGaac -5'
26269 3' -56.7 NC_005345.2 + 40774 0.69 0.424578
Target:  5'- -gGGCCgguCGGCCGGCGcgGGCGUGUc-- -3'
miRNA:   3'- agUUGG---GCCGGCUGUa-CCGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 38533 0.69 0.424578
Target:  5'- cUCGACCCgGGCCGACcgGccGCGccGCUg- -3'
miRNA:   3'- -AGUUGGG-CCGGCUGuaC--CGCa-CGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.