miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26640 3' -56.4 NC_005808.1 + 4233 1.1 0.000555
Target:  5'- gCUACACCUCGACCACGGCGCGCAAGGu -3'
miRNA:   3'- -GAUGUGGAGCUGGUGCCGCGCGUUCC- -5'
26640 3' -56.4 NC_005808.1 + 13377 0.7 0.376737
Target:  5'- cCUACGCCgccuacaacgcCGGCCcCGGCGCGCu--- -3'
miRNA:   3'- -GAUGUGGa----------GCUGGuGCCGCGCGuucc -5'
26640 3' -56.4 NC_005808.1 + 35792 0.69 0.413178
Target:  5'- uCUugGCCUCGAacagaACGGgGaaaGCGAGGc -3'
miRNA:   3'- -GAugUGGAGCUgg---UGCCgCg--CGUUCC- -5'
26640 3' -56.4 NC_005808.1 + 42038 0.66 0.625699
Target:  5'- ---gGCCUCaGCCuCGGCGCgggugaacgggucagGCGGGGg -3'
miRNA:   3'- gaugUGGAGcUGGuGCCGCG---------------CGUUCC- -5'
26640 3' -56.4 NC_005808.1 + 8144 0.74 0.225018
Target:  5'- uUGgGCCUcccauaucaaggcagCGACCugGGCGCGCGucauGGa -3'
miRNA:   3'- gAUgUGGA---------------GCUGGugCCGCGCGUu---CC- -5'
26640 3' -56.4 NC_005808.1 + 14451 0.73 0.232832
Target:  5'- gCUACGCCUaCGuuCCGCGGCGCGgAugcccccgccuuccAGGa -3'
miRNA:   3'- -GAUGUGGA-GCu-GGUGCCGCGCgU--------------UCC- -5'
26640 3' -56.4 NC_005808.1 + 1432 0.73 0.240872
Target:  5'- uUGCGCUUCGGUCGcCGGaUGCGCAAGGc -3'
miRNA:   3'- gAUGUGGAGCUGGU-GCC-GCGCGUUCC- -5'
26640 3' -56.4 NC_005808.1 + 38061 0.72 0.295522
Target:  5'- -aACugCUCGGCCuCGGCGaugaugucgGCGGGGa -3'
miRNA:   3'- gaUGugGAGCUGGuGCCGCg--------CGUUCC- -5'
26640 3' -56.4 NC_005808.1 + 28621 0.71 0.302994
Target:  5'- -cGCGCCgcgaUGGCCgGCGGC-CGCAAGGu -3'
miRNA:   3'- gaUGUGGa---GCUGG-UGCCGcGCGUUCC- -5'
26640 3' -56.4 NC_005808.1 + 27495 0.7 0.350863
Target:  5'- cCUGCgGCCgcCGGgCGCGGUGCGCcAGGc -3'
miRNA:   3'- -GAUG-UGGa-GCUgGUGCCGCGCGuUCC- -5'
26640 3' -56.4 NC_005808.1 + 12741 0.71 0.326278
Target:  5'- -cGgGCCUCGACaCGCGcCGCGCAugauGGg -3'
miRNA:   3'- gaUgUGGAGCUG-GUGCcGCGCGUu---CC- -5'
26640 3' -56.4 NC_005808.1 + 32523 0.71 0.302994
Target:  5'- --cCACCUCGGCagUAgGGgGCGUAGGGg -3'
miRNA:   3'- gauGUGGAGCUG--GUgCCgCGCGUUCC- -5'
26640 3' -56.4 NC_005808.1 + 22187 0.8 0.079696
Target:  5'- --cCugUUCGACCGCGGCGCGCu-GGa -3'
miRNA:   3'- gauGugGAGCUGGUGCCGCGCGuuCC- -5'
26640 3' -56.4 NC_005808.1 + 28884 0.71 0.334329
Target:  5'- -cGCaACC-CGACgACGGCGCGCu-GGc -3'
miRNA:   3'- gaUG-UGGaGCUGgUGCCGCGCGuuCC- -5'
26640 3' -56.4 NC_005808.1 + 35958 0.79 0.097376
Target:  5'- -cACACCUUGuCCugGGCGCGCAu-- -3'
miRNA:   3'- gaUGUGGAGCuGGugCCGCGCGUucc -5'
26640 3' -56.4 NC_005808.1 + 35432 0.72 0.295522
Target:  5'- cCUGCaACUUCGGCCACuGGCGCGgGc-- -3'
miRNA:   3'- -GAUG-UGGAGCUGGUG-CCGCGCgUucc -5'
26640 3' -56.4 NC_005808.1 + 12087 0.71 0.342524
Target:  5'- -aAgACCUCGccgGCCACGGCcGCGCugcuGGc -3'
miRNA:   3'- gaUgUGGAGC---UGGUGCCG-CGCGuu--CC- -5'
26640 3' -56.4 NC_005808.1 + 23602 0.7 0.394686
Target:  5'- -gAgGCCaUCGACCGCGuGCGcCGCcuGGa -3'
miRNA:   3'- gaUgUGG-AGCUGGUGC-CGC-GCGuuCC- -5'
26640 3' -56.4 NC_005808.1 + 34606 0.74 0.225018
Target:  5'- -cGCugCUCGACCAUcaguucaccgcccaaGGCGCGCAc-- -3'
miRNA:   3'- gaUGugGAGCUGGUG---------------CCGCGCGUucc -5'
26640 3' -56.4 NC_005808.1 + 20007 0.73 0.234667
Target:  5'- ---uGCCUCGuCCACGGC-CGaCAAGGa -3'
miRNA:   3'- gaugUGGAGCuGGUGCCGcGC-GUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.