Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26642 | 3' | -65.2 | NC_005808.1 | + | 4697 | 1.06 | 0.00011 |
Target: 5'- uGCCGACCCUGCGGCAGCGCGGGCCAAc -3' miRNA: 3'- -CGGCUGGGACGCCGUCGCGCCCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 12270 | 0.83 | 0.009432 |
Target: 5'- cCCGACCagggGCaGGCAGCGCGGGCCGGu -3' miRNA: 3'- cGGCUGGga--CG-CCGUCGCGCCCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 1367 | 0.76 | 0.03424 |
Target: 5'- gGCCGucGCCCUgggcGCGGCGGUGUGGGCgGg -3' miRNA: 3'- -CGGC--UGGGA----CGCCGUCGCGCCCGgUu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 31028 | 0.75 | 0.042963 |
Target: 5'- uGCCGGCCga--GGCAaucGCGCGGGCCAAc -3' miRNA: 3'- -CGGCUGGgacgCCGU---CGCGCCCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 27503 | 0.73 | 0.053846 |
Target: 5'- cGCCaGGgCCUGCGGCcgccgGGCGCGGugcGCCAGg -3' miRNA: 3'- -CGG-CUgGGACGCCG-----UCGCGCC---CGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 28545 | 0.72 | 0.065347 |
Target: 5'- gGCaCGACCUUGCGGCcgccggccaucgcGGCGCGcacgucGGCCAc -3' miRNA: 3'- -CG-GCUGGGACGCCG-------------UCGCGC------CCGGUu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 30564 | 0.71 | 0.075336 |
Target: 5'- uGCCGGCCgcuguagaUGCGGCAGaugGUGGGCUGGg -3' miRNA: 3'- -CGGCUGGg-------ACGCCGUCg--CGCCCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 42135 | 0.71 | 0.07964 |
Target: 5'- gGCCGAauaCCU-CGGaCGuGCGCGGGCCGc -3' miRNA: 3'- -CGGCUg--GGAcGCC-GU-CGCGCCCGGUu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 32379 | 0.71 | 0.08188 |
Target: 5'- cGCCGGCCUUGaUGGCGGCGaUGaGGUCGc -3' miRNA: 3'- -CGGCUGGGAC-GCCGUCGC-GC-CCGGUu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 40901 | 0.71 | 0.08654 |
Target: 5'- gGCCGGCCUgcGCcuGGC-GCGuCGGGCCGAu -3' miRNA: 3'- -CGGCUGGGa-CG--CCGuCGC-GCCCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 14936 | 0.7 | 0.090699 |
Target: 5'- aGCCGggcaacuuaaaggcGCCCaGCGuGCGGCGCuGGCCGc -3' miRNA: 3'- -CGGC--------------UGGGaCGC-CGUCGCGcCCGGUu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 27830 | 0.7 | 0.091452 |
Target: 5'- cGCUG-CCC-GCGGUGGCGCcGGCCGc -3' miRNA: 3'- -CGGCuGGGaCGCCGUCGCGcCCGGUu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 35435 | 0.7 | 0.094007 |
Target: 5'- ---aGCCCUGCaacuucGGCcacuGGCGCGGGCCGAu -3' miRNA: 3'- cggcUGGGACG------CCG----UCGCGCCCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 4018 | 0.7 | 0.096629 |
Target: 5'- cGCCGGCCaccaGCGucauGCcGCGCGGGUCGAg -3' miRNA: 3'- -CGGCUGGga--CGC----CGuCGCGCCCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 22896 | 0.7 | 0.102081 |
Target: 5'- uGUCGGCUgU-CGGCAGCGCggcgaagucGGGCCAGu -3' miRNA: 3'- -CGGCUGGgAcGCCGUCGCG---------CCCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 38624 | 0.7 | 0.104914 |
Target: 5'- aGCCGGCC--GCGGCgAGCGgCaGGCCAGc -3' miRNA: 3'- -CGGCUGGgaCGCCG-UCGC-GcCCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 24422 | 0.69 | 0.110805 |
Target: 5'- aGCCGGCCCgauuUGuCGGUgccGCGCGcGGCCu- -3' miRNA: 3'- -CGGCUGGG----AC-GCCGu--CGCGC-CCGGuu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 1243 | 0.69 | 0.113865 |
Target: 5'- gGCCGACCCcgGCGGCgagacuauguggGGCGUGaccGCCGc -3' miRNA: 3'- -CGGCUGGGa-CGCCG------------UCGCGCc--CGGUu -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 8470 | 0.69 | 0.120224 |
Target: 5'- cGCaCGGCCCUGgccgacUGGCuacgcagccAGCGCGaGGCCGGg -3' miRNA: 3'- -CG-GCUGGGAC------GCCG---------UCGCGC-CCGGUU- -5' |
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26642 | 3' | -65.2 | NC_005808.1 | + | 679 | 0.69 | 0.123525 |
Target: 5'- gGCCG-CCUa-CGGCGGCGCcGGCCGGg -3' miRNA: 3'- -CGGCuGGGacGCCGUCGCGcCCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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