miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26647 5' -60.5 NC_005808.1 + 212 0.71 0.17422
Target:  5'- cGACACGGcgaacUGGCGcaccUCGGCaUUGGCGCg -3'
miRNA:   3'- -CUGUGCC-----ACCGCc---GGUCGcAACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 446 0.68 0.28492
Target:  5'- -gUugGGcugcUGcGCGGCCAGCuugcgGGCGCu -3'
miRNA:   3'- cuGugCC----AC-CGCCGGUCGcaa--CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 1462 0.68 0.257714
Target:  5'- cGGCGCGGUcGGCGGCCuccuggcaGGCcgggguaucgcaGUgcuggucggacaUGGCGCc -3'
miRNA:   3'- -CUGUGCCA-CCGCCGG--------UCG------------CA------------ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 1710 0.67 0.329896
Target:  5'- -cCGUGGgccGGCGuGCCGGCGagGGCGUc -3'
miRNA:   3'- cuGUGCCa--CCGC-CGGUCGCaaCCGCG- -5'
26647 5' -60.5 NC_005808.1 + 3573 0.66 0.355108
Target:  5'- gGGCugGGcguacaccgauccgcGGCcGCCAGUGUUGGcCGUg -3'
miRNA:   3'- -CUGugCCa--------------CCGcCGGUCGCAACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 3659 0.7 0.214697
Target:  5'- uACACGGccaacacUGGCGGCC-GCGgaucGGUGUa -3'
miRNA:   3'- cUGUGCC-------ACCGCCGGuCGCaa--CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 3738 0.66 0.362677
Target:  5'- cACGcCGGUGGUGGgCA-CGUcGGUGCc -3'
miRNA:   3'- cUGU-GCCACCGCCgGUcGCAaCCGCG- -5'
26647 5' -60.5 NC_005808.1 + 3944 0.66 0.346009
Target:  5'- cGGCgACGGcagcGCGGCCuacAGCGacGGCGCc -3'
miRNA:   3'- -CUG-UGCCac--CGCCGG---UCGCaaCCGCG- -5'
26647 5' -60.5 NC_005808.1 + 4086 0.73 0.13282
Target:  5'- cGCGCGGcaugacgcUGGUGGCCGGCGcguuuugGGCGg -3'
miRNA:   3'- cUGUGCC--------ACCGCCGGUCGCaa-----CCGCg -5'
26647 5' -60.5 NC_005808.1 + 4277 0.68 0.28492
Target:  5'- cGGCAUGGUGaUGGCC-GUGUcGGCGg -3'
miRNA:   3'- -CUGUGCCACcGCCGGuCGCAaCCGCg -5'
26647 5' -60.5 NC_005808.1 + 5599 0.74 0.109446
Target:  5'- cGACcuggGCGGaaccugGGCGGCCGGCGUguccuacgacuuUGGCaGCa -3'
miRNA:   3'- -CUG----UGCCa-----CCGCCGGUCGCA------------ACCG-CG- -5'
26647 5' -60.5 NC_005808.1 + 5644 1.1 0.000181
Target:  5'- cGACACGGUGGCGGCCAGCGUUGGCGCc -3'
miRNA:   3'- -CUGUGCCACCGCCGGUCGCAACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 6403 0.73 0.11895
Target:  5'- cGGCcCGGUGuagucGCGGCCcauGuCGUUGGCGCc -3'
miRNA:   3'- -CUGuGCCAC-----CGCCGGu--C-GCAACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 7482 0.7 0.209707
Target:  5'- aGugGCGGUGGUauaGGCCccuugcaacuGGCGgcGcGCGCu -3'
miRNA:   3'- -CugUGCCACCG---CCGG----------UCGCaaC-CGCG- -5'
26647 5' -60.5 NC_005808.1 + 8118 0.69 0.251254
Target:  5'- uGCACcgc-GCGGCCGGCGUUGGUuguggGCg -3'
miRNA:   3'- cUGUGccacCGCCGGUCGCAACCG-----CG- -5'
26647 5' -60.5 NC_005808.1 + 8663 0.67 0.32205
Target:  5'- cGCGCGGUcGGCauugcguGCCgcgcgcaccucGGCGUUGGUGUa -3'
miRNA:   3'- cUGUGCCA-CCGc------CGG-----------UCGCAACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 9000 0.71 0.16511
Target:  5'- cGCGCGGgGGCGcuuCCAGCaGgcGGCGCa -3'
miRNA:   3'- cUGUGCCaCCGCc--GGUCG-CaaCCGCG- -5'
26647 5' -60.5 NC_005808.1 + 9303 0.66 0.379896
Target:  5'- uGACuuccuCGGcgaccUGGCGGCgCA-CGUcGGCGCg -3'
miRNA:   3'- -CUGu----GCC-----ACCGCCG-GUcGCAaCCGCG- -5'
26647 5' -60.5 NC_005808.1 + 10600 0.68 0.271043
Target:  5'- uGCGC-GUGGCGGCggaaAGCGUggccGGCGg -3'
miRNA:   3'- cUGUGcCACCGCCGg---UCGCAa---CCGCg -5'
26647 5' -60.5 NC_005808.1 + 11407 0.66 0.389596
Target:  5'- -cCAgGGUcuugagcagcGGCGaGCCGGCGUgcaggucgccgauaaGGCGCg -3'
miRNA:   3'- cuGUgCCA----------CCGC-CGGUCGCAa--------------CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.