miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26651 3' -55.3 NC_005808.1 + 36111 0.67 0.558724
Target:  5'- aGC-GCGUgaaUGCGGGCCugcgCGGCGuGCa -3'
miRNA:   3'- aCGaCGCAa--GCGUCUGGua--GCUGC-CG- -5'
26651 3' -55.3 NC_005808.1 + 18280 0.68 0.526073
Target:  5'- uUGCcgGCcgUCaGCGGGCCGguggCGACGGUg -3'
miRNA:   3'- -ACGa-CGcaAG-CGUCUGGUa---GCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 11172 0.68 0.526073
Target:  5'- cGUUGCGUgCGCuggucGGCCGUggUGAUGGUg -3'
miRNA:   3'- aCGACGCAaGCGu----CUGGUA--GCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 29057 0.68 0.536883
Target:  5'- gGCgGC--UCGUAGGCCAUCaGCGGg -3'
miRNA:   3'- aCGaCGcaAGCGUCUGGUAGcUGCCg -5'
26651 3' -55.3 NC_005808.1 + 14350 0.68 0.536883
Target:  5'- cUGCUG-GUUCGCGGuguCCuggaaggCGGgGGCa -3'
miRNA:   3'- -ACGACgCAAGCGUCu--GGua-----GCUgCCG- -5'
26651 3' -55.3 NC_005808.1 + 15590 0.68 0.536883
Target:  5'- cGCUGCGgaUGCAccgcGCCAUCGGCcaGGa -3'
miRNA:   3'- aCGACGCaaGCGUc---UGGUAGCUG--CCg -5'
26651 3' -55.3 NC_005808.1 + 1680 0.68 0.541229
Target:  5'- aUGCUGCcg-CGCAGguagucgagaaauucGCCGUgGGcCGGCg -3'
miRNA:   3'- -ACGACGcaaGCGUC---------------UGGUAgCU-GCCG- -5'
26651 3' -55.3 NC_005808.1 + 2518 0.67 0.547769
Target:  5'- gGCgggGCuucgGUUCGUAGACCAggaauUCG-CGGUa -3'
miRNA:   3'- aCGa--CG----CAAGCGUCUGGU-----AGCuGCCG- -5'
26651 3' -55.3 NC_005808.1 + 35732 0.67 0.547769
Target:  5'- cGUUcUGUUCGaggccaAGACCGUCaACGGCg -3'
miRNA:   3'- aCGAcGCAAGCg-----UCUGGUAGcUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 8633 0.69 0.483726
Target:  5'- cGCUGCGguggcgaggUCGCcGGCCuucAUCGcGCGGUc -3'
miRNA:   3'- aCGACGCa--------AGCGuCUGG---UAGC-UGCCG- -5'
26651 3' -55.3 NC_005808.1 + 7295 0.69 0.463172
Target:  5'- cGUaGUGcUCGCGGauggcGCCGUCGAUGGUc -3'
miRNA:   3'- aCGaCGCaAGCGUC-----UGGUAGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 24144 0.69 0.443085
Target:  5'- gGCUGCG--CGCcuGGCCcagcgccUCGACGGCu -3'
miRNA:   3'- aCGACGCaaGCGu-CUGGu------AGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 20762 0.74 0.226914
Target:  5'- cGCUGCGccgCGCucGACuCAUCGcGCGGCu -3'
miRNA:   3'- aCGACGCaa-GCGu-CUG-GUAGC-UGCCG- -5'
26651 3' -55.3 NC_005808.1 + 14825 0.74 0.2393
Target:  5'- cGCUGCcUUCGCccaGGucgauGCCGUUGGCGGCc -3'
miRNA:   3'- aCGACGcAAGCG---UC-----UGGUAGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 3461 0.72 0.309826
Target:  5'- cGCcGCGcgccccgaugUUCGCGGGCgAguUCGACGGCc -3'
miRNA:   3'- aCGaCGC----------AAGCGUCUGgU--AGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 28553 0.72 0.31769
Target:  5'- -cUUGCGgcCGCcGGCCAUCG-CGGCg -3'
miRNA:   3'- acGACGCaaGCGuCUGGUAGCuGCCG- -5'
26651 3' -55.3 NC_005808.1 + 40708 0.71 0.333864
Target:  5'- cGCUGCuGUUCGCccacccGGCCAgCGcCGGCc -3'
miRNA:   3'- aCGACG-CAAGCGu-----CUGGUaGCuGCCG- -5'
26651 3' -55.3 NC_005808.1 + 22413 0.71 0.359239
Target:  5'- cGCgUGaCGUUCGCcaGCCAcgccUUGACGGCg -3'
miRNA:   3'- aCG-AC-GCAAGCGucUGGU----AGCUGCCG- -5'
26651 3' -55.3 NC_005808.1 + 4811 0.71 0.37689
Target:  5'- cGCUGCGggaUUGCuGGCCggCGACaGGUc -3'
miRNA:   3'- aCGACGCa--AGCGuCUGGuaGCUG-CCG- -5'
26651 3' -55.3 NC_005808.1 + 26169 0.7 0.40444
Target:  5'- cUGCgaUGCGgUCGCAGAUUucgguggCGAUGGCu -3'
miRNA:   3'- -ACG--ACGCaAGCGUCUGGua-----GCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.