miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26664 3' -57.8 NC_005808.1 + 37083 0.66 0.562226
Target:  5'- gCCUGGAacuaccaaggcacCGAGUUGGCGC-UAUGgcaCCu -3'
miRNA:   3'- -GGGCCU-------------GCUCAACCGCGcGUACa--GGc -5'
26664 3' -57.8 NC_005808.1 + 40914 0.66 0.55689
Target:  5'- aCCGGGCGGucauggccggccugcGccUGGCGCGUcgGgCCGa -3'
miRNA:   3'- gGGCCUGCU---------------Ca-ACCGCGCGuaCaGGC- -5'
26664 3' -57.8 NC_005808.1 + 10078 0.66 0.510659
Target:  5'- aCCaGGGCGGGggccgGGCGCGCGgcacuUUCGa -3'
miRNA:   3'- gGG-CCUGCUCaa---CCGCGCGUac---AGGC- -5'
26664 3' -57.8 NC_005808.1 + 13167 0.66 0.508594
Target:  5'- aCCCGGaACGGcucaagauuGCGCGCGUGgaggCCGa -3'
miRNA:   3'- -GGGCC-UGCUcaac-----CGCGCGUACa---GGC- -5'
26664 3' -57.8 NC_005808.1 + 34584 0.67 0.500369
Target:  5'- aCCGG-CGaAGcUGGCGCcaaggGCAcGUCCGa -3'
miRNA:   3'- gGGCCuGC-UCaACCGCG-----CGUaCAGGC- -5'
26664 3' -57.8 NC_005808.1 + 40152 0.67 0.490171
Target:  5'- aCCCGuuCGGGcugGGCGUGCcgGUCa- -3'
miRNA:   3'- -GGGCcuGCUCaa-CCGCGCGuaCAGgc -5'
26664 3' -57.8 NC_005808.1 + 3300 0.67 0.477061
Target:  5'- gCUCGGGCaGGUcgaauuauucaucgUGGCGgGCAaGUCCa -3'
miRNA:   3'- -GGGCCUGcUCA--------------ACCGCgCGUaCAGGc -5'
26664 3' -57.8 NC_005808.1 + 10580 0.68 0.440742
Target:  5'- cCUCGGGCGuAGUacccaGGCGCGCAg--CCu -3'
miRNA:   3'- -GGGCCUGC-UCAa----CCGCGCGUacaGGc -5'
26664 3' -57.8 NC_005808.1 + 8571 0.68 0.440742
Target:  5'- uCCUGGGCGucGUaGGcCGCGCGUGcggCCu -3'
miRNA:   3'- -GGGCCUGCu-CAaCC-GCGCGUACa--GGc -5'
26664 3' -57.8 NC_005808.1 + 10956 0.68 0.431197
Target:  5'- uUCCGGugGAGgaauacgccGCGCGCAUcgcgCCGa -3'
miRNA:   3'- -GGGCCugCUCaac------CGCGCGUAca--GGC- -5'
26664 3' -57.8 NC_005808.1 + 34726 0.68 0.431197
Target:  5'- cCCUGGACGAGUUcgaguuccugGGUgacuucaaGCGCGUGcgCCu -3'
miRNA:   3'- -GGGCCUGCUCAA----------CCG--------CGCGUACa-GGc -5'
26664 3' -57.8 NC_005808.1 + 38213 0.68 0.421775
Target:  5'- gCCCGGcGCGAcGgcgccUGGCuGCGCAUccgccugccGUCCGg -3'
miRNA:   3'- -GGGCC-UGCU-Ca----ACCG-CGCGUA---------CAGGC- -5'
26664 3' -57.8 NC_005808.1 + 5597 0.68 0.412478
Target:  5'- aCCUGGGCGGaaccugGGCGgccgGCGUGUCCu -3'
miRNA:   3'- -GGGCCUGCUcaa---CCGCg---CGUACAGGc -5'
26664 3' -57.8 NC_005808.1 + 12275 0.72 0.242407
Target:  5'- uCCUGGGCGGGUugcUGGCccaGCGUG-CCGg -3'
miRNA:   3'- -GGGCCUGCUCA---ACCGcg-CGUACaGGC- -5'
26664 3' -57.8 NC_005808.1 + 1583 0.74 0.191158
Target:  5'- gCUGGGCGgcgaauaAGggGGCGC-CAUGUCCGa -3'
miRNA:   3'- gGGCCUGC-------UCaaCCGCGcGUACAGGC- -5'
26664 3' -57.8 NC_005808.1 + 12903 1.11 0.000381
Target:  5'- gCCCGGACGAGUUGGCGCGCAUGUCCGa -3'
miRNA:   3'- -GGGCCUGCUCAACCGCGCGUACAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.