miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26666 5' -55.8 NC_005808.1 + 6371 0.67 0.519185
Target:  5'- cGGCCcACGUCGgcaaucAGGCGCAGgccgGCcGGc -3'
miRNA:   3'- -CCGGcUGUAGC------UCCGCGUCaa--CGuCU- -5'
26666 5' -55.8 NC_005808.1 + 32203 0.67 0.515979
Target:  5'- cGGCCuugagggauucgggGGCGUCGAGGUcgGCAGcgGcCAGGg -3'
miRNA:   3'- -CCGG--------------CUGUAGCUCCG--CGUCaaC-GUCU- -5'
26666 5' -55.8 NC_005808.1 + 19996 0.68 0.50853
Target:  5'- cGGCCGACAaggaguUCGGcGGCGacaAGcUGCAaGAa -3'
miRNA:   3'- -CCGGCUGU------AGCU-CCGCg--UCaACGU-CU- -5'
26666 5' -55.8 NC_005808.1 + 29263 0.68 0.50853
Target:  5'- aGGCCGGCcgguGUCGGGGUGgAcGUgGUAGGc -3'
miRNA:   3'- -CCGGCUG----UAGCUCCGCgU-CAaCGUCU- -5'
26666 5' -55.8 NC_005808.1 + 16595 0.68 0.486464
Target:  5'- aGGCCGACcacgCGAugguguuGGCGCcgccGUUGguGAa -3'
miRNA:   3'- -CCGGCUGua--GCU-------CCGCGu---CAACguCU- -5'
26666 5' -55.8 NC_005808.1 + 25617 0.68 0.477147
Target:  5'- cGCCGACAUCaucggcuacgGGGGCGCuGccgGCGGc -3'
miRNA:   3'- cCGGCUGUAG----------CUCCGCGuCaa-CGUCu -5'
26666 5' -55.8 NC_005808.1 + 8240 0.68 0.477147
Target:  5'- cGCCGGCAgcaUCcGGGCGCAcgcGCAGGg -3'
miRNA:   3'- cCGGCUGU---AGcUCCGCGUcaaCGUCU- -5'
26666 5' -55.8 NC_005808.1 + 1329 0.68 0.456766
Target:  5'- aGGCCGACAagcgCGAGGaagcCGUGGUcgGCGGc -3'
miRNA:   3'- -CCGGCUGUa---GCUCC----GCGUCAa-CGUCu -5'
26666 5' -55.8 NC_005808.1 + 32532 0.69 0.446752
Target:  5'- cGGCCGcccccaccucgGCAguagGGGGCGUAGggGCAGu -3'
miRNA:   3'- -CCGGC-----------UGUag--CUCCGCGUCaaCGUCu -5'
26666 5' -55.8 NC_005808.1 + 39331 0.69 0.436862
Target:  5'- gGGCCGACuAUCu-GGCGCGGaaGCuGAa -3'
miRNA:   3'- -CCGGCUG-UAGcuCCGCGUCaaCGuCU- -5'
26666 5' -55.8 NC_005808.1 + 23736 0.69 0.436862
Target:  5'- cGGcCCGACcgaggGUCGccuGGUGCAGUUGCu-- -3'
miRNA:   3'- -CC-GGCUG-----UAGCu--CCGCGUCAACGucu -5'
26666 5' -55.8 NC_005808.1 + 13595 0.69 0.417466
Target:  5'- cGGCCGACAguucGGCGCGGacgGCAa- -3'
miRNA:   3'- -CCGGCUGUagcuCCGCGUCaa-CGUcu -5'
26666 5' -55.8 NC_005808.1 + 18331 0.69 0.417466
Target:  5'- cGGCCGGCAaguUCucGGCGCAGgucgUgaccggcauccaGCAGAa -3'
miRNA:   3'- -CCGGCUGU---AGcuCCGCGUCa---A------------CGUCU- -5'
26666 5' -55.8 NC_005808.1 + 9248 0.7 0.371358
Target:  5'- aGGCCaACGUCGAcGGCGCcaAGUUGUc-- -3'
miRNA:   3'- -CCGGcUGUAGCU-CCGCG--UCAACGucu -5'
26666 5' -55.8 NC_005808.1 + 2436 0.7 0.362562
Target:  5'- aGGCCGGCcUCGAagaucGGCGCcacgauGUUGCAc- -3'
miRNA:   3'- -CCGGCUGuAGCU-----CCGCGu-----CAACGUcu -5'
26666 5' -55.8 NC_005808.1 + 35349 0.7 0.353912
Target:  5'- aGGCCggcGACAUCGGcccGCGCcaguggccgaAGUUGCAGGg -3'
miRNA:   3'- -CCGG---CUGUAGCUc--CGCG----------UCAACGUCU- -5'
26666 5' -55.8 NC_005808.1 + 14775 0.7 0.353912
Target:  5'- gGGCgcagGGCAUgGAGGCGCAacUGCAGGc -3'
miRNA:   3'- -CCGg---CUGUAgCUCCGCGUcaACGUCU- -5'
26666 5' -55.8 NC_005808.1 + 11600 0.71 0.328845
Target:  5'- cGGCUGGCcgCcGGGCaGCAGUgccaGCGGAa -3'
miRNA:   3'- -CCGGCUGuaGcUCCG-CGUCAa---CGUCU- -5'
26666 5' -55.8 NC_005808.1 + 4849 0.71 0.320786
Target:  5'- aGCCGGCGUgCuGGGCGCAG-UGUGGGc -3'
miRNA:   3'- cCGGCUGUA-GcUCCGCGUCaACGUCU- -5'
26666 5' -55.8 NC_005808.1 + 4172 0.74 0.223356
Target:  5'- cGCCGugGUCGAGGUGUAGccaGUGGGc -3'
miRNA:   3'- cCGGCugUAGCUCCGCGUCaa-CGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.