miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26691 5' -51.5 NC_005808.1 + 1104 0.71 0.551158
Target:  5'- uGGCGGCGGUAGGCgGCAaAGGcuuGCCg -3'
miRNA:   3'- -CCGCCGCUGUUCGaCGU-UCUuu-UGGa -5'
26691 5' -51.5 NC_005808.1 + 1321 0.78 0.233329
Target:  5'- cGGCcaccaGGcCGACAAGC-GCGAGGAAGCCg -3'
miRNA:   3'- -CCG-----CC-GCUGUUCGaCGUUCUUUUGGa -5'
26691 5' -51.5 NC_005808.1 + 1724 0.66 0.798717
Target:  5'- cGGUGGCGACAAugUGguAGAugaacACCg -3'
miRNA:   3'- -CCGCCGCUGUUcgACguUCUuu---UGGa -5'
26691 5' -51.5 NC_005808.1 + 4043 0.7 0.59698
Target:  5'- cGGCcGCGGCGAGCgGCAGGccagcGGCCc -3'
miRNA:   3'- -CCGcCGCUGUUCGaCGUUCuu---UUGGa -5'
26691 5' -51.5 NC_005808.1 + 4825 0.67 0.777999
Target:  5'- uGGcCGGCGACAGGUcGCcguAGucgauGACCa -3'
miRNA:   3'- -CC-GCCGCUGUUCGaCGu--UCuu---UUGGa -5'
26691 5' -51.5 NC_005808.1 + 5069 0.66 0.84692
Target:  5'- aGGCcGCGGCAGGUuuUGCGguuGGAAcaggcGGCCg -3'
miRNA:   3'- -CCGcCGCUGUUCG--ACGU---UCUU-----UUGGa -5'
26691 5' -51.5 NC_005808.1 + 6642 0.69 0.654912
Target:  5'- cGCGGacaCGuACAGGUUGCcGGGGAAGCCg -3'
miRNA:   3'- cCGCC---GC-UGUUCGACG-UUCUUUUGGa -5'
26691 5' -51.5 NC_005808.1 + 7394 0.66 0.815724
Target:  5'- cGCGGCGACcuuccaccagcuugAAGCcggGCAccGGAugGCCg -3'
miRNA:   3'- cCGCCGCUG--------------UUCGa--CGU--UCUuuUGGa -5'
26691 5' -51.5 NC_005808.1 + 7685 0.66 0.798717
Target:  5'- uGGCGGCGAUcuGCgGCcGGu-AGCCc -3'
miRNA:   3'- -CCGCCGCUGuuCGaCGuUCuuUUGGa -5'
26691 5' -51.5 NC_005808.1 + 7739 0.66 0.818662
Target:  5'- cGGCGGcCGGCuuGCUGUuggcgacgAAGGAAuCCa -3'
miRNA:   3'- -CCGCC-GCUGuuCGACG--------UUCUUUuGGa -5'
26691 5' -51.5 NC_005808.1 + 9342 0.7 0.62013
Target:  5'- gGGCGGCGGCAuccuuuugcAGUUGCuugauGAugcGGCCg -3'
miRNA:   3'- -CCGCCGCUGU---------UCGACGuu---CUu--UUGGa -5'
26691 5' -51.5 NC_005808.1 + 9901 0.71 0.539857
Target:  5'- cGUGGCGAuguCGAGCUGCAcuucgaGGAAAaagugGCCg -3'
miRNA:   3'- cCGCCGCU---GUUCGACGU------UCUUU-----UGGa -5'
26691 5' -51.5 NC_005808.1 + 10246 0.68 0.689482
Target:  5'- cGGCGGCGACcgcagcgaccuGGGCgGCGguugucGGGAcGCCg -3'
miRNA:   3'- -CCGCCGCUG-----------UUCGaCGU------UCUUuUGGa -5'
26691 5' -51.5 NC_005808.1 + 10380 0.71 0.516394
Target:  5'- uGGUGGUgaguucgGACAGGC-GCGAGAAAACa- -3'
miRNA:   3'- -CCGCCG-------CUGUUCGaCGUUCUUUUGga -5'
26691 5' -51.5 NC_005808.1 + 10890 0.68 0.723501
Target:  5'- cGCGcGCGGCGGGCUGguCAGGcgGugCUg -3'
miRNA:   3'- cCGC-CGCUGUUCGAC--GUUCuuUugGA- -5'
26691 5' -51.5 NC_005808.1 + 11421 0.68 0.712244
Target:  5'- aGCGGCGAgCcGGCgUGCAGGuc-GCCg -3'
miRNA:   3'- cCGCCGCU-GuUCG-ACGUUCuuuUGGa -5'
26691 5' -51.5 NC_005808.1 + 11757 0.76 0.289603
Target:  5'- -uCGGCGACAGGUUGCAgcGGAuuuGCCg -3'
miRNA:   3'- ccGCCGCUGUUCGACGU--UCUuu-UGGa -5'
26691 5' -51.5 NC_005808.1 + 12309 0.7 0.58545
Target:  5'- cGGCGGCGuCGAauucGUUGCucauuuacGGGAAACCUu -3'
miRNA:   3'- -CCGCCGCuGUU----CGACGu-------UCUUUUGGA- -5'
26691 5' -51.5 NC_005808.1 + 13324 0.7 0.573963
Target:  5'- aGGCGGCG-UAGGCUuucgGCAGGuc-GCCg -3'
miRNA:   3'- -CCGCCGCuGUUCGA----CGUUCuuuUGGa -5'
26691 5' -51.5 NC_005808.1 + 14855 0.68 0.689482
Target:  5'- --gGGCaGCGAGUUGCGcGAGGGCCUc -3'
miRNA:   3'- ccgCCGcUGUUCGACGUuCUUUUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.