miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 5' -57.6 NC_005808.1 + 17857 0.66 0.47995
Target:  5'- cGUGGCCUcgucGC-CCAGGua--GGCCAGg -3'
miRNA:   3'- -UACCGGAa---CGuGGUCCugagCUGGUC- -5'
26720 5' -57.6 NC_005808.1 + 37081 0.66 0.47788
Target:  5'- -cGGCCUggaacuaccaagGCACCGaguuggcgcuauGGcacCUCGACCAGa -3'
miRNA:   3'- uaCCGGAa-----------CGUGGU------------CCu--GAGCUGGUC- -5'
26720 5' -57.6 NC_005808.1 + 32922 0.66 0.45945
Target:  5'- -cGGCC-UGCACgGcGGCuguUCGGCCAGg -3'
miRNA:   3'- uaCCGGaACGUGgUcCUG---AGCUGGUC- -5'
26720 5' -57.6 NC_005808.1 + 40832 0.66 0.45945
Target:  5'- -cGGCCcgacGCGCCAGG-CgcaGGCCGGc -3'
miRNA:   3'- uaCCGGaa--CGUGGUCCuGag-CUGGUC- -5'
26720 5' -57.6 NC_005808.1 + 13247 0.66 0.449376
Target:  5'- -aGGCCaccgGCGCgugguucgAGGACUUGGCCGGc -3'
miRNA:   3'- uaCCGGaa--CGUGg-------UCCUGAGCUGGUC- -5'
26720 5' -57.6 NC_005808.1 + 40635 0.66 0.448375
Target:  5'- -cGuGCCUUcCcCCAGGgccgcgcGCUCGACCAGa -3'
miRNA:   3'- uaC-CGGAAcGuGGUCC-------UGAGCUGGUC- -5'
26720 5' -57.6 NC_005808.1 + 8987 0.66 0.446377
Target:  5'- gGUGGCCgUGcCGCCAgcgguggccgugccGGAUUCG-CCAGc -3'
miRNA:   3'- -UACCGGaAC-GUGGU--------------CCUGAGCuGGUC- -5'
26720 5' -57.6 NC_005808.1 + 11016 0.67 0.407504
Target:  5'- uUGGCgUcgaugaacaccugcUGCACCGGGccguuCUCGGCCGc -3'
miRNA:   3'- uACCGgA--------------ACGUGGUCCu----GAGCUGGUc -5'
26720 5' -57.6 NC_005808.1 + 24485 0.67 0.391637
Target:  5'- uUGGCC-UGCGCCAGGAagUCGuagggGCUGGc -3'
miRNA:   3'- uACCGGaACGUGGUCCUg-AGC-----UGGUC- -5'
26720 5' -57.6 NC_005808.1 + 4576 0.67 0.391637
Target:  5'- -aGGCgCUgcucggUGCGCCAGGcgaggaacuGCUCGGCCu- -3'
miRNA:   3'- uaCCG-GA------ACGUGGUCC---------UGAGCUGGuc -5'
26720 5' -57.6 NC_005808.1 + 12568 0.68 0.373493
Target:  5'- cGUGGUgUgggGCACCaAGGGCgCGGCCGu -3'
miRNA:   3'- -UACCGgAa--CGUGG-UCCUGaGCUGGUc -5'
26720 5' -57.6 NC_005808.1 + 13994 0.68 0.347366
Target:  5'- cUGGCCUcgUGCugCAcaGCUUGACCAc -3'
miRNA:   3'- uACCGGA--ACGugGUccUGAGCUGGUc -5'
26720 5' -57.6 NC_005808.1 + 18461 0.68 0.338953
Target:  5'- -cGGUCgcgGCGCCGGcGGCgUCGGCCGa -3'
miRNA:   3'- uaCCGGaa-CGUGGUC-CUG-AGCUGGUc -5'
26720 5' -57.6 NC_005808.1 + 27700 0.68 0.338953
Target:  5'- -aGGCCgcGCGCCGGcagcGGCUCGccGCCGGu -3'
miRNA:   3'- uaCCGGaaCGUGGUC----CUGAGC--UGGUC- -5'
26720 5' -57.6 NC_005808.1 + 17104 0.69 0.330688
Target:  5'- -cGGCCggGCcUUGGGGCUUGACCAc -3'
miRNA:   3'- uaCCGGaaCGuGGUCCUGAGCUGGUc -5'
26720 5' -57.6 NC_005808.1 + 25312 0.69 0.330688
Target:  5'- -cGGCCcUGcCACCGGcGCUCGucGCCGGg -3'
miRNA:   3'- uaCCGGaAC-GUGGUCcUGAGC--UGGUC- -5'
26720 5' -57.6 NC_005808.1 + 15149 0.69 0.322573
Target:  5'- cUGGCauaccaGCGCCAGGGCcugCGGCCGc -3'
miRNA:   3'- uACCGgaa---CGUGGUCCUGa--GCUGGUc -5'
26720 5' -57.6 NC_005808.1 + 26878 0.69 0.322573
Target:  5'- cAUGGCCUcGCGCCAG--UUCGAugcCCAGg -3'
miRNA:   3'- -UACCGGAaCGUGGUCcuGAGCU---GGUC- -5'
26720 5' -57.6 NC_005808.1 + 6287 0.7 0.263015
Target:  5'- uUGGCUgggGCGCCGGGGCUUaucuCCGGu -3'
miRNA:   3'- uACCGGaa-CGUGGUCCUGAGcu--GGUC- -5'
26720 5' -57.6 NC_005808.1 + 1666 0.71 0.230529
Target:  5'- -aGGUCUUGCACCucgcgcuuGGACUCGcggcgaGCCAu -3'
miRNA:   3'- uaCCGGAACGUGGu-------CCUGAGC------UGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.