miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26775 3' -55.4 NC_005808.1 + 7361 0.66 0.637858
Target:  5'- cGACCuCGGCGuCGUUCGUcCAGCg--- -3'
miRNA:   3'- cUUGG-GCCGC-GCGAGCGuGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 9315 0.66 0.637858
Target:  5'- cGACCUGGCgGCGCacgUCGgCGCGGCg--- -3'
miRNA:   3'- cUUGGGCCG-CGCG---AGC-GUGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 12328 0.66 0.637858
Target:  5'- --uUCCGGCGa-CUCGCGCGACc--- -3'
miRNA:   3'- cuuGGGCCGCgcGAGCGUGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 12392 0.66 0.615296
Target:  5'- cGAugCCuGCGCGCUUGUauGCGGCcuugAUGc -3'
miRNA:   3'- -CUugGGcCGCGCGAGCG--UGUUGa---UAC- -5'
26775 3' -55.4 NC_005808.1 + 38440 0.66 0.615296
Target:  5'- cGACCaCGGCGCGCaaggUGgGCGGCUu-- -3'
miRNA:   3'- cUUGG-GCCGCGCGa---GCgUGUUGAuac -5'
26775 3' -55.4 NC_005808.1 + 34827 0.66 0.615296
Target:  5'- uGGACgCCGGCGCagaUCGCGCcgguGCUGc- -3'
miRNA:   3'- -CUUG-GGCCGCGcg-AGCGUGu---UGAUac -5'
26775 3' -55.4 NC_005808.1 + 18461 0.66 0.615296
Target:  5'- uGGGCCaGGCGCGCagccgGCugGACUAc- -3'
miRNA:   3'- -CUUGGgCCGCGCGag---CGugUUGAUac -5'
26775 3' -55.4 NC_005808.1 + 5632 0.66 0.615296
Target:  5'- uGGCgCGGCGCaGCUUGCugGugGCUGg- -3'
miRNA:   3'- cUUGgGCCGCG-CGAGCGugU--UGAUac -5'
26775 3' -55.4 NC_005808.1 + 29427 0.66 0.604033
Target:  5'- -uGCCCa-CGCGCUCGCACGucGCg--- -3'
miRNA:   3'- cuUGGGccGCGCGAGCGUGU--UGauac -5'
26775 3' -55.4 NC_005808.1 + 1080 0.66 0.592795
Target:  5'- cGACCCGGCGCGCguacuucaUGUugGCGGCg--- -3'
miRNA:   3'- cUUGGGCCGCGCGa-------GCG--UGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 8380 0.66 0.592795
Target:  5'- cGAACCCGGC---CUCGCGCuGGCUGc- -3'
miRNA:   3'- -CUUGGGCCGcgcGAGCGUG-UUGAUac -5'
26775 3' -55.4 NC_005808.1 + 12976 0.66 0.581593
Target:  5'- aAGCCCGGCcacaaGCGCccggCGCugGACa--- -3'
miRNA:   3'- cUUGGGCCG-----CGCGa---GCGugUUGauac -5'
26775 3' -55.4 NC_005808.1 + 15357 0.66 0.581593
Target:  5'- aGAGCCUGGgGCGC-CGgCugGACa--- -3'
miRNA:   3'- -CUUGGGCCgCGCGaGC-GugUUGauac -5'
26775 3' -55.4 NC_005808.1 + 18134 0.67 0.570434
Target:  5'- cGAACuuGuCGCccgGCUCGCGCAGCUu-- -3'
miRNA:   3'- -CUUGggCcGCG---CGAGCGUGUUGAuac -5'
26775 3' -55.4 NC_005808.1 + 26272 0.67 0.559328
Target:  5'- cGGCCUGGuCG-GCUCGCGCAucgcGCgcgAUGg -3'
miRNA:   3'- cUUGGGCC-GCgCGAGCGUGU----UGa--UAC- -5'
26775 3' -55.4 NC_005808.1 + 37927 0.67 0.559328
Target:  5'- -uAUCCGGCGCGCUggugccCGC-CAACa--- -3'
miRNA:   3'- cuUGGGCCGCGCGA------GCGuGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 15138 0.67 0.548284
Target:  5'- -uGCgCGGCGCGCUgGCAuacCAGCg--- -3'
miRNA:   3'- cuUGgGCCGCGCGAgCGU---GUUGauac -5'
26775 3' -55.4 NC_005808.1 + 8735 0.67 0.548284
Target:  5'- -uGCCCGGCGgGCgcggCGCuaccguCAAC-AUGg -3'
miRNA:   3'- cuUGGGCCGCgCGa---GCGu-----GUUGaUAC- -5'
26775 3' -55.4 NC_005808.1 + 26029 0.67 0.548284
Target:  5'- --gUCCGGCGCGUcgCGCuACAACg--- -3'
miRNA:   3'- cuuGGGCCGCGCGa-GCG-UGUUGauac -5'
26775 3' -55.4 NC_005808.1 + 5746 0.67 0.548284
Target:  5'- -cGCCCaGCGCGC-CGgGCAGCg--- -3'
miRNA:   3'- cuUGGGcCGCGCGaGCgUGUUGauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.