miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26775 5' -60.7 NC_005808.1 + 27700 0.66 0.399948
Target:  5'- -----aGGCCgCgCGCCGGCAgCGGCuCGCc -3'
miRNA:   3'- gaguagCCGG-G-GCGGUUGU-GCCG-GCG- -5'
26775 5' -60.7 NC_005808.1 + 25707 0.66 0.399948
Target:  5'- gCUCAUaccaGCCCCG-CGGCGgGGUCGUc -3'
miRNA:   3'- -GAGUAgc--CGGGGCgGUUGUgCCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 19251 0.66 0.399948
Target:  5'- uUCAUCGGCggcgaggCCGUCGaauuGCGCGGCUa- -3'
miRNA:   3'- gAGUAGCCGg------GGCGGU----UGUGCCGGcg -5'
26775 5' -60.7 NC_005808.1 + 613 0.66 0.399052
Target:  5'- --gGUCGGCCagcagcgCCGUgGACACGGCguccgGCg -3'
miRNA:   3'- gagUAGCCGG-------GGCGgUUGUGCCGg----CG- -5'
26775 5' -60.7 NC_005808.1 + 39738 0.66 0.397263
Target:  5'- aCUgGUCgaaccaGGCCCCucgcuggugcuggcGCCGcuGCGCguGGCCGCg -3'
miRNA:   3'- -GAgUAG------CCGGGG--------------CGGU--UGUG--CCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 11144 0.66 0.391043
Target:  5'- ---uUCGG-CCUGCU-GCugGGCCGCc -3'
miRNA:   3'- gaguAGCCgGGGCGGuUGugCCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 38715 0.66 0.391043
Target:  5'- uUCggCGGCgaCGgCAGCGCGGCCu- -3'
miRNA:   3'- gAGuaGCCGggGCgGUUGUGCCGGcg -5'
26775 5' -60.7 NC_005808.1 + 3425 0.66 0.385762
Target:  5'- ---uUCGGCCCCGCUAcucaagaaucaggugGuCACagacGCCGCg -3'
miRNA:   3'- gaguAGCCGGGGCGGU---------------U-GUGc---CGGCG- -5'
26775 5' -60.7 NC_005808.1 + 30107 0.66 0.373625
Target:  5'- cCUUGUCccaggcgaugaGGCCgCGCCAgaACACG-CCGCc -3'
miRNA:   3'- -GAGUAG-----------CCGGgGCGGU--UGUGCcGGCG- -5'
26775 5' -60.7 NC_005808.1 + 27821 0.66 0.373625
Target:  5'- cCUCGcgCGcGCugCCCGCgGugGCGcCGGCCGCg -3'
miRNA:   3'- -GAGUa-GC-CG--GGGCGgU--UGU-GCCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 27767 0.66 0.373625
Target:  5'- cCUCGUcCGGCUCgGaCAcguacacgaaGCGCGcGCCGCg -3'
miRNA:   3'- -GAGUA-GCCGGGgCgGU----------UGUGC-CGGCG- -5'
26775 5' -60.7 NC_005808.1 + 18272 0.66 0.373625
Target:  5'- -gCAUC-GCUCUGCCGccugaccCGCGGCUGCu -3'
miRNA:   3'- gaGUAGcCGGGGCGGUu------GUGCCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 31900 0.66 0.370205
Target:  5'- --aAUCGGCCgaggccgugcgcgCUGCCGucaagacgcacuggACACGGCgGCg -3'
miRNA:   3'- gagUAGCCGG-------------GGCGGU--------------UGUGCCGgCG- -5'
26775 5' -60.7 NC_005808.1 + 25594 0.66 0.368504
Target:  5'- gUCugCGGCCCaggcaguggcaaccaCGgCGGCGCGGUCGCc -3'
miRNA:   3'- gAGuaGCCGGG---------------GCgGUUGUGCCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 18145 0.66 0.365116
Target:  5'- gUCGUCGGCgucaaugUCGCCGA---GGCCGCg -3'
miRNA:   3'- gAGUAGCCGg------GGCGGUUgugCCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 21621 0.66 0.365116
Target:  5'- --aAUCGGCCUCGgaCAACACGcCCGa -3'
miRNA:   3'- gagUAGCCGGGGCg-GUUGUGCcGGCg -5'
26775 5' -60.7 NC_005808.1 + 732 0.66 0.365116
Target:  5'- ----gCGGCUuuGCCGACAacgcCGGCCa- -3'
miRNA:   3'- gaguaGCCGGggCGGUUGU----GCCGGcg -5'
26775 5' -60.7 NC_005808.1 + 29521 0.66 0.365116
Target:  5'- -gCGUggaGGCCgagCGCCAAUucaacaugcagACGGCCGCa -3'
miRNA:   3'- gaGUAg--CCGGg--GCGGUUG-----------UGCCGGCG- -5'
26775 5' -60.7 NC_005808.1 + 27502 0.66 0.356741
Target:  5'- -cCggCGGCCucggCCGCCAgcuucucgGCGCGGUCGg -3'
miRNA:   3'- gaGuaGCCGG----GGCGGU--------UGUGCCGGCg -5'
26775 5' -60.7 NC_005808.1 + 3283 0.66 0.356741
Target:  5'- --aGUCGGCCCgUGCCuuuGCGauGCCGg -3'
miRNA:   3'- gagUAGCCGGG-GCGGu--UGUgcCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.