miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26783 3' -63 NC_005808.1 + 23091 0.66 0.283295
Target:  5'- cUCGCCccgACGCCaACGGCggCGCCCacgGCGa -3'
miRNA:   3'- -AGCGGa--UGCGG-UGCCGg-GUGGG---CGUa -5'
26783 3' -63 NC_005808.1 + 30582 0.66 0.283295
Target:  5'- cUCGCCg--GCCACGGCCgCGCugcuggCCGaCGUg -3'
miRNA:   3'- -AGCGGaugCGGUGCCGG-GUG------GGC-GUA- -5'
26783 3' -63 NC_005808.1 + 12903 0.66 0.283295
Target:  5'- gUCGCCUuuggcgauGCGCU-CGGCCgCGCCCa--- -3'
miRNA:   3'- -AGCGGA--------UGCGGuGCCGG-GUGGGcgua -5'
26783 3' -63 NC_005808.1 + 10009 0.66 0.283295
Target:  5'- gUGCCgcGCGCC-CGGCCCccGCCCugGUAg -3'
miRNA:   3'- aGCGGa-UGCGGuGCCGGG--UGGG--CGUa -5'
26783 3' -63 NC_005808.1 + 11933 0.66 0.283295
Target:  5'- cCGCCUACaCCcaGCGGCCCGacgaauuggUCUGCGc -3'
miRNA:   3'- aGCGGAUGcGG--UGCCGGGU---------GGGCGUa -5'
26783 3' -63 NC_005808.1 + 29985 0.66 0.283295
Target:  5'- aUGCCgaGCGCguCGGCgCCAUgCGCAa -3'
miRNA:   3'- aGCGGa-UGCGguGCCG-GGUGgGCGUa -5'
26783 3' -63 NC_005808.1 + 18584 0.66 0.276385
Target:  5'- uUCGCUgaaUugGCCgACGcGCCCACCuuCGCc- -3'
miRNA:   3'- -AGCGG---AugCGG-UGC-CGGGUGG--GCGua -5'
26783 3' -63 NC_005808.1 + 14832 0.66 0.276385
Target:  5'- uUCGCCcaggucgAUGCCguugGCGGCCaGCgCCGCAc -3'
miRNA:   3'- -AGCGGa------UGCGG----UGCCGGgUG-GGCGUa -5'
26783 3' -63 NC_005808.1 + 11840 0.66 0.276385
Target:  5'- -gGCC-GCGCCGCGGUUgGCCUGgGc -3'
miRNA:   3'- agCGGaUGCGGUGCCGGgUGGGCgUa -5'
26783 3' -63 NC_005808.1 + 9982 0.66 0.276385
Target:  5'- cCGCg-GCGUCGCGGCCCuugaCGCGg -3'
miRNA:   3'- aGCGgaUGCGGUGCCGGGugg-GCGUa -5'
26783 3' -63 NC_005808.1 + 42450 0.66 0.276385
Target:  5'- cCGCCUGCggggaaGCC-UGGCgCCACgCCGUAg -3'
miRNA:   3'- aGCGGAUG------CGGuGCCG-GGUG-GGCGUa -5'
26783 3' -63 NC_005808.1 + 14582 0.66 0.276385
Target:  5'- -gGCUgAUGCCgGCGGCCgAUCCGCu- -3'
miRNA:   3'- agCGGaUGCGG-UGCCGGgUGGGCGua -5'
26783 3' -63 NC_005808.1 + 14420 0.66 0.276385
Target:  5'- gUCGCCaggcGCGCCuGCGGCaCCguguugggcgaaACCUGCGg -3'
miRNA:   3'- -AGCGGa---UGCGG-UGCCG-GG------------UGGGCGUa -5'
26783 3' -63 NC_005808.1 + 38561 0.66 0.276385
Target:  5'- cUGCCgcuCGCCGCGGCCgGCUuugaagccuauCGCu- -3'
miRNA:   3'- aGCGGau-GCGGUGCCGGgUGG-----------GCGua -5'
26783 3' -63 NC_005808.1 + 17005 0.66 0.276385
Target:  5'- gUUGCCacUGCCugGGCCgCAgaCCGCGg -3'
miRNA:   3'- -AGCGGauGCGGugCCGG-GUg-GGCGUa -5'
26783 3' -63 NC_005808.1 + 33768 0.66 0.26961
Target:  5'- -gGCCcGCGUUGCGGCUgGCCCGa-- -3'
miRNA:   3'- agCGGaUGCGGUGCCGGgUGGGCgua -5'
26783 3' -63 NC_005808.1 + 33998 0.66 0.26961
Target:  5'- aCGCCUACGCCAUc-CCCACggUCGCc- -3'
miRNA:   3'- aGCGGAUGCGGUGccGGGUG--GGCGua -5'
26783 3' -63 NC_005808.1 + 24509 0.66 0.262314
Target:  5'- gCGuCCUgguucGCGCCggcuucgGCGGCCCAgcacgcacCCCGCGc -3'
miRNA:   3'- aGC-GGA-----UGCGG-------UGCCGGGU--------GGGCGUa -5'
26783 3' -63 NC_005808.1 + 23759 0.66 0.256464
Target:  5'- aUGCCgGCGCCACcgGGCCgAUgcgCCGCGg -3'
miRNA:   3'- aGCGGaUGCGGUG--CCGGgUG---GGCGUa -5'
26783 3' -63 NC_005808.1 + 22264 0.66 0.256464
Target:  5'- -aGCCgcaACGaCCACugaaGGCCaGCCCGCAUc -3'
miRNA:   3'- agCGGa--UGC-GGUG----CCGGgUGGGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.