Results 1 - 20 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26829 | 3' | -50.7 | NC_005809.1 | + | 29550 | 0.66 | 0.91672 |
Target: 5'- gGACAcccACGCCGUGcucgggguaucGCGUCAGguCGGc -3' miRNA: 3'- gCUGU---UGCGGCGCu----------UGUAGUUguGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 10957 | 0.66 | 0.909497 |
Target: 5'- gCGGCGACaGCCGgGGACAcugggccaccuguUCGGCcaggcCGGa -3' miRNA: 3'- -GCUGUUG-CGGCgCUUGU-------------AGUUGu----GCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 7219 | 0.66 | 0.903325 |
Target: 5'- aCGGCAgcaucuGCGCCGCGcuCAcccUCGGCGauguCGGc -3' miRNA: 3'- -GCUGU------UGCGGCGCuuGU---AGUUGU----GCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 18391 | 0.66 | 0.888775 |
Target: 5'- cCGAUGGCGCCggugGCGGccACGUCGGCgaaGGu -3' miRNA: 3'- -GCUGUUGCGG----CGCU--UGUAGUUGug-CC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 21798 | 0.66 | 0.888775 |
Target: 5'- gGACGugcaGCCGCGcGAUgaGUCgAGCGCGGc -3' miRNA: 3'- gCUGUug--CGGCGC-UUG--UAG-UUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 32559 | 0.66 | 0.91672 |
Target: 5'- cCGGCGAUGCCGCuccGACGuaUCAGgACa- -3' miRNA: 3'- -GCUGUUGCGGCGc--UUGU--AGUUgUGcc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 28591 | 0.66 | 0.914785 |
Target: 5'- cCGGCAGCGUgGUGucgGUCAguuccuugaaccggGCGCGGa -3' miRNA: 3'- -GCUGUUGCGgCGCuugUAGU--------------UGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 27766 | 0.66 | 0.896192 |
Target: 5'- aGGCAGCGCCGcCGAgguGCAgguuuccagCGACAUc- -3' miRNA: 3'- gCUGUUGCGGC-GCU---UGUa--------GUUGUGcc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 27994 | 0.66 | 0.896192 |
Target: 5'- gGAUcg-GCCGCcGGCAUCAGCcCGGu -3' miRNA: 3'- gCUGuugCGGCGcUUGUAGUUGuGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 35039 | 0.66 | 0.910168 |
Target: 5'- uCGAgcACGCCGcCGAGC----GCACGGu -3' miRNA: 3'- -GCUguUGCGGC-GCUUGuaguUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 2428 | 0.66 | 0.896192 |
Target: 5'- aCGGCAGCagGCCGgccuCGAAgAUCGGCGCc- -3' miRNA: 3'- -GCUGUUG--CGGC----GCUUgUAGUUGUGcc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 34338 | 0.66 | 0.888775 |
Target: 5'- gCGACuuCGCCGaCGAG----GGCACGGc -3' miRNA: 3'- -GCUGuuGCGGC-GCUUguagUUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 8287 | 0.66 | 0.903325 |
Target: 5'- gGGCcACGCUGCcgGGGCAgugCAGCcaGCGGu -3' miRNA: 3'- gCUGuUGCGGCG--CUUGUa--GUUG--UGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 19752 | 0.66 | 0.902625 |
Target: 5'- uCGGCAGCGCgGCGAAgucgggcCAgucCGGCACc- -3' miRNA: 3'- -GCUGUUGCGgCGCUU-------GUa--GUUGUGcc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 18465 | 0.66 | 0.888775 |
Target: 5'- -cGCGGCGCCgGCGG-CGUCGGC-CGa -3' miRNA: 3'- gcUGUUGCGG-CGCUuGUAGUUGuGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 32589 | 0.66 | 0.888775 |
Target: 5'- cCGcCGACGCUGUGAccaagcuggcccGCGUCAAgggccgcgacgcCGCGGu -3' miRNA: 3'- -GCuGUUGCGGCGCU------------UGUAGUU------------GUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 31432 | 0.66 | 0.888775 |
Target: 5'- aCGGCGACGCCaCGAucugCGGCGUGGu -3' miRNA: 3'- -GCUGUUGCGGcGCUuguaGUUGUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 37012 | 0.66 | 0.896192 |
Target: 5'- gCGuuGGCGCCGUcGAUAcCGugGCGGg -3' miRNA: 3'- -GCugUUGCGGCGcUUGUaGUugUGCC- -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 33794 | 0.66 | 0.91672 |
Target: 5'- cCGACccaucguGCGCCGCGuGCugcccgaagCGGCACGu -3' miRNA: 3'- -GCUGu------UGCGGCGCuUGua-------GUUGUGCc -5' |
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26829 | 3' | -50.7 | NC_005809.1 | + | 37186 | 0.66 | 0.896192 |
Target: 5'- uCGGCGACGUgaGCac-CGUCAGCACGc -3' miRNA: 3'- -GCUGUUGCGg-CGcuuGUAGUUGUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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