Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27224 | 5' | -58.6 | NC_005832.1 | + | 43901 | 0.69 | 0.538349 |
Target: 5'- aGCCUCuuuaCGGACCuagaguccaccAGGCUCUuuUGGGGg -3' miRNA: 3'- aCGGAG----GCCUGGuu---------UCCGAGG--ACCUC- -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 88141 | 0.69 | 0.530326 |
Target: 5'- -aUCUCCgagaGGACCcuggccAGGCUCCUGGAc -3' miRNA: 3'- acGGAGG----CCUGGuu----UCCGAGGACCUc -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 87251 | 0.69 | 0.510467 |
Target: 5'- aGCCUgaGGGCCAuggucAAGGCgUCUGGAa -3' miRNA: 3'- aCGGAggCCUGGU-----UUCCGaGGACCUc -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 36558 | 0.69 | 0.500654 |
Target: 5'- gGCCgCCaGGGUCGGAGuGUUCCUGGGGg -3' miRNA: 3'- aCGGaGG-CCUGGUUUC-CGAGGACCUC- -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 21149 | 0.69 | 0.494806 |
Target: 5'- gGCCUUgGGAaacaGGAGGCcggcgggagcugggaUCCUGGAGg -3' miRNA: 3'- aCGGAGgCCUgg--UUUCCG---------------AGGACCUC- -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 95509 | 0.7 | 0.481284 |
Target: 5'- gGuCCUgCCGGuCCuAGGGUUCCUGGuGg -3' miRNA: 3'- aC-GGA-GGCCuGGuUUCCGAGGACCuC- -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 95719 | 0.7 | 0.481284 |
Target: 5'- gGuCCUgCCGGuCCuAGGGUUCCUGGuGg -3' miRNA: 3'- aC-GGA-GGCCuGGuUUCCGAGGACCuC- -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 80838 | 0.7 | 0.481284 |
Target: 5'- gGCUUCCGuGaACCccuccAGGGC-CCUGGAGg -3' miRNA: 3'- aCGGAGGC-C-UGGu----UUCCGaGGACCUC- -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 95355 | 0.7 | 0.452937 |
Target: 5'- cGCCUCUGGAgaCUGAGGGUgUCCcGGGGa -3' miRNA: 3'- aCGGAGGCCU--GGUUUCCG-AGGaCCUC- -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 87727 | 0.7 | 0.452937 |
Target: 5'- aGUCUCUGGGgugcUCAuGGGCUCCaGGAGc -3' miRNA: 3'- aCGGAGGCCU----GGUuUCCGAGGaCCUC- -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 32393 | 0.7 | 0.44369 |
Target: 5'- cUGgCUCCGGGgccCUAAAGGCcuccuugugCCUGGAGu -3' miRNA: 3'- -ACgGAGGCCU---GGUUUCCGa--------GGACCUC- -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 12673 | 0.71 | 0.416606 |
Target: 5'- cUGCuCUCCGuuaaGGCCGAGGGCcUCCUuGGAc -3' miRNA: 3'- -ACG-GAGGC----CUGGUUUCCG-AGGA-CCUc -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 97171 | 0.71 | 0.415721 |
Target: 5'- aGCCUggacuccCUGGACguCAAgaagcucgacAGGCUCCUGGAGc -3' miRNA: 3'- aCGGA-------GGCCUG--GUU----------UCCGAGGACCUC- -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 42520 | 0.73 | 0.324251 |
Target: 5'- gGCCUCUguGGAagaggaccgcaacuCCAAGGGCUCCaaGGAGg -3' miRNA: 3'- aCGGAGG--CCU--------------GGUUUCCGAGGa-CCUC- -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 2897 | 0.73 | 0.319058 |
Target: 5'- aGCCUUugUGGACCGGAGGUggCUGGAc -3' miRNA: 3'- aCGGAG--GCCUGGUUUCCGagGACCUc -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 67606 | 0.73 | 0.311749 |
Target: 5'- uUGCCUCgGGGacuggaCAGAGGC-CCUGGGu -3' miRNA: 3'- -ACGGAGgCCUg-----GUUUCCGaGGACCUc -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 67068 | 0.73 | 0.297513 |
Target: 5'- gGCCUgacCUGGACgCcGAGGC-CCUGGAGg -3' miRNA: 3'- aCGGA---GGCCUG-GuUUCCGaGGACCUC- -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 62017 | 0.75 | 0.239687 |
Target: 5'- aGCCUCCGGGCUGGAGGg-UgUGGGGg -3' miRNA: 3'- aCGGAGGCCUGGUUUCCgaGgACCUC- -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 11539 | 0.75 | 0.222058 |
Target: 5'- aGCUUCUGGugGCCAAAGGCggggucgUCCUGGAc -3' miRNA: 3'- aCGGAGGCC--UGGUUUCCG-------AGGACCUc -5' |
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27224 | 5' | -58.6 | NC_005832.1 | + | 96794 | 0.76 | 0.206578 |
Target: 5'- gGCCUCaagcagacauguCGGGCUucaAGAGGCUCCUGGGa -3' miRNA: 3'- aCGGAG------------GCCUGG---UUUCCGAGGACCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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